Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 ICOSLG-202ENST00000400377 2907 ntTSL 2 BASIC12.22□□□□□ -0.45
SDCBPO00560 FBXL18-201ENST00000382368 3498 ntAPPRIS P2 TSL 5 BASIC12.22□□□□□ -0.45
SDCBPO00560 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC12.22□□□□□ -0.45
SDCBPO00560 PDGFRB-201ENST00000261799 5717 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
SDCBPO00560 WARS2-201ENST00000235521 2800 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
SDCBPO00560 CACNA1C-231ENST00000616390 2833 ntTSL 2 BASIC12.22□□□□□ -0.45
SDCBPO00560 SLC12A6-206ENST00000558589 3866 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
SDCBPO00560 DNM3-201ENST00000355305 3280 ntTSL 5 BASIC12.22□□□□□ -0.45
SDCBPO00560 UBE2E2-202ENST00000396703 2748 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
SDCBPO00560 FASN-201ENST00000306749 8565 ntAPPRIS P2 TSL 1 (best) BASIC12.22□□□□□ -0.45
SDCBPO00560 ADAMTSL2-203ENST00000393061 4270 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
SDCBPO00560 ALAS1-204ENST00000469224 2125 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
SDCBPO00560 PLOD2-202ENST00000360060 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
SDCBPO00560 CDK3-201ENST00000425876 1582 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
SDCBPO00560 CDK3-202ENST00000448471 1570 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
SDCBPO00560 HNRNPLL-209ENST00000449105 4173 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
SDCBPO00560 DSE-201ENST00000331677 7237 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
SDCBPO00560 PRKCH-201ENST00000332981 3582 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
SDCBPO00560 SERPING1-201ENST00000278407 2002 ntAPPRIS P2 TSL 1 (best) BASIC12.21□□□□□ -0.45
SDCBPO00560 ENG-202ENST00000373203 3048 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
SDCBPO00560 CREBZF-204ENST00000527447 4037 ntAPPRIS P1 BASIC12.21□□□□□ -0.45
SDCBPO00560 LINC00567-201ENST00000569854 3409 ntBASIC12.21□□□□□ -0.45
SDCBPO00560 FAM168B-202ENST00000409185 5285 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
SDCBPO00560 MEGF8-201ENST00000251268 9549 ntAPPRIS ALT2 TSL 5 BASIC12.21□□□□□ -0.45
SDCBPO00560 C2orf68-201ENST00000306336 2837 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
SDCBPO00560 CPPED1-201ENST00000261660 1898 ntTSL 2 BASIC12.21□□□□□ -0.45
SDCBPO00560 MFSD11-217ENST00000590514 1891 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
SDCBPO00560 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC12.21□□□□□ -0.45
SDCBPO00560 PRDM15-207ENST00000447207 4928 ntAPPRIS ALT2 TSL 5 BASIC12.21□□□□□ -0.45
SDCBPO00560 FBXL7-203ENST00000510662 1758 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
SDCBPO00560 C15orf39-202ENST00000394987 4430 ntAPPRIS P2 TSL 1 (best) BASIC12.21□□□□□ -0.45
SDCBPO00560 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC12.21□□□□□ -0.45
SDCBPO00560 CELF4-201ENST00000334919 3542 ntAPPRIS ALT1 TSL 1 (best) BASIC12.21□□□□□ -0.45
SDCBPO00560 CACNA1G-203ENST00000358244 7030 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
SDCBPO00560 CDIP1-201ENST00000399599 3009 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
SDCBPO00560 RTFDC1-201ENST00000023939 1745 ntTSL 2 BASIC12.21□□□□□ -0.45
SDCBPO00560 PTPRH-202ENST00000376350 3877 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.45
SDCBPO00560 CCDC142-202ENST00000393965 3406 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
SDCBPO00560 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
SDCBPO00560 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
SDCBPO00560 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
SDCBPO00560 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
SDCBPO00560 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
SDCBPO00560 MORC4-202ENST00000355610 3834 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.45
SDCBPO00560 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
SDCBPO00560 AL512384.1-201ENST00000406683 331 ntBASIC12.21□□□□□ -0.45
SDCBPO00560 FAAP100-202ENST00000425898 2996 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
SDCBPO00560 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
SDCBPO00560 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC12.21□□□□□ -0.45
SDCBPO00560 AL391280.1-201ENST00000506969 1062 ntBASIC12.21□□□□□ -0.45
SDCBPO00560 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC12.21□□□□□ -0.45
SDCBPO00560 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
SDCBPO00560 AC135782.3-201ENST00000562782 2105 ntBASIC12.21□□□□□ -0.45
SDCBPO00560 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC12.21□□□□□ -0.45
SDCBPO00560 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC12.21□□□□□ -0.45
SDCBPO00560 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC12.21□□□□□ -0.45
SDCBPO00560 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC12.21□□□□□ -0.45
SDCBPO00560 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC12.21□□□□□ -0.45
SDCBPO00560 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC12.21□□□□□ -0.45
SDCBPO00560 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC12.21□□□□□ -0.45
SDCBPO00560 PRPF40B-209ENST00000548825 3307 ntAPPRIS P2 TSL 5 BASIC12.21□□□□□ -0.45
SDCBPO00560 ASAP3-202ENST00000437606 2865 ntAPPRIS ALT2 TSL 2 BASIC12.21□□□□□ -0.45
SDCBPO00560 AC098936.1-201ENST00000442318 2885 ntTSL 2 BASIC12.21□□□□□ -0.45
SDCBPO00560 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC12.21□□□□□ -0.46
SDCBPO00560 CCT2-201ENST00000299300 2041 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
SDCBPO00560 PCK2-216ENST00000561286 2012 ntTSL 2 BASIC12.21□□□□□ -0.46
SDCBPO00560 DYNC1I1-202ENST00000359388 2843 ntAPPRIS ALT1 TSL 1 (best) BASIC12.21□□□□□ -0.46
SDCBPO00560 ITGB2-205ENST00000397850 3178 ntAPPRIS P1 TSL 5 BASIC12.21□□□□□ -0.46
SDCBPO00560 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC12.21□□□□□ -0.46
SDCBPO00560 RAB3D-201ENST00000222120 4273 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
SDCBPO00560 UQCRFS1-201ENST00000304863 3475 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
SDCBPO00560 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
SDCBPO00560 ABCA17P-202ENST00000469908 4188 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
SDCBPO00560 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC12.21□□□□□ -0.46
SDCBPO00560 ZBTB11-201ENST00000312938 6020 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
SDCBPO00560 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.46
SDCBPO00560 ARSH-201ENST00000381130 1875 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
SDCBPO00560 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
SDCBPO00560 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC12.21□□□□□ -0.46
SDCBPO00560 CTCFL-208ENST00000432255 2955 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
SDCBPO00560 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
SDCBPO00560 MAGED4B-201ENST00000335504 2578 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.46
SDCBPO00560 MTSS1-216ENST00000524090 2166 ntTSL 2 BASIC12.2□□□□□ -0.46
SDCBPO00560 ZSCAN16-AS1-201ENST00000600652 2163 ntTSL 2 BASIC12.2□□□□□ -0.46
SDCBPO00560 YTHDF3-209ENST00000617200 5076 ntTSL 5 BASIC12.2□□□□□ -0.46
SDCBPO00560 LINC00865-202ENST00000448963 4272 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
SDCBPO00560 DDO-202ENST00000368924 2130 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
SDCBPO00560 ATP5J2-PTCD1-201ENST00000413834 2491 ntAPPRIS P1 TSL 2 BASIC12.2□□□□□ -0.46
SDCBPO00560 FOXP3-204ENST00000455775 2448 ntTSL 5 BASIC12.2□□□□□ -0.46
SDCBPO00560 TBC1D3E-201ENST00000621587 2076 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
SDCBPO00560 SIGLEC6-201ENST00000343300 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
SDCBPO00560 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
SDCBPO00560 KIRREL3-205ENST00000529097 3397 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
SDCBPO00560 SMYD4-201ENST00000305513 4384 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
SDCBPO00560 THEMIS2-201ENST00000328928 2337 ntTSL 2 BASIC12.2□□□□□ -0.46
SDCBPO00560 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
SDCBPO00560 SUPT7L-203ENST00000405491 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC12.2□□□□□ -0.46
SDCBPO00560 ABAT-215ENST00000569156 1911 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
SDCBPO00560 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC12.2□□□□□ -0.46
SDCBPO00560 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms