Protein–RNA interactions for Protein: P52948

NUP98, Nuclear pore complex protein Nup98-Nup96, humanhuman

Predictions only

Length 1,817 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98P52948 RASGEF1C-202ENST00000393371 2395 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
NUP98P52948 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
NUP98P52948 GABRA1-201ENST00000023897 2083 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
NUP98P52948 AL513497.1-201ENST00000624273 2083 ntBASIC17.22■□□□□ 0.35
NUP98P52948 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC17.22■□□□□ 0.35
NUP98P52948 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
NUP98P52948 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
NUP98P52948 LTF-203ENST00000426532 2494 ntTSL 2 BASIC17.22■□□□□ 0.35
NUP98P52948 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
NUP98P52948 STK16-202ENST00000409260 1493 ntTSL 5 BASIC17.22■□□□□ 0.35
NUP98P52948 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
NUP98P52948 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
NUP98P52948 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
NUP98P52948 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
NUP98P52948 AL157996.1-201ENST00000624684 2299 ntBASIC17.22■□□□□ 0.35
NUP98P52948 NAXD-201ENST00000309957 2659 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
NUP98P52948 SGCA-201ENST00000262018 1432 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
NUP98P52948 DAXX-201ENST00000266000 2606 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
NUP98P52948 VPS28-201ENST00000292510 979 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
NUP98P52948 TRAPPC3-201ENST00000373159 590 ntTSL 3 BASIC17.21■□□□□ 0.35
NUP98P52948 VPS28-202ENST00000377348 1097 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
NUP98P52948 RPS9-202ENST00000391751 510 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
NUP98P52948 OR7E155P-201ENST00000412208 1014 ntBASIC17.21■□□□□ 0.35
NUP98P52948 CORO1C-203ENST00000421578 1296 ntTSL 2 BASIC17.21■□□□□ 0.35
NUP98P52948 FDPSP7-201ENST00000429043 1054 ntBASIC17.21■□□□□ 0.35
NUP98P52948 EEF1DP5-201ENST00000431410 772 ntBASIC17.21■□□□□ 0.35
NUP98P52948 AL035413.1-201ENST00000437898 507 ntTSL 2 BASIC17.21■□□□□ 0.35
NUP98P52948 AC025594.1-201ENST00000469533 543 ntBASIC17.21■□□□□ 0.35
NUP98P52948 AC087620.1-201ENST00000520037 447 ntTSL 3 BASIC17.21■□□□□ 0.35
NUP98P52948 VPS28-210ENST00000529182 1010 ntTSL 2 BASIC17.21■□□□□ 0.35
NUP98P52948 ETV4-208ENST00000586826 917 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
NUP98P52948 AC012087.1-201ENST00000608068 809 ntTSL 5 BASIC17.21■□□□□ 0.35
NUP98P52948 PACRG-AS3-203ENST00000614038 1246 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
NUP98P52948 SMG8-201ENST00000300917 3263 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
NUP98P52948 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
NUP98P52948 TMEM254-213ENST00000613758 2154 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
NUP98P52948 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
NUP98P52948 SIGLEC6-204ENST00000391797 1391 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
NUP98P52948 LINC00205-201ENST00000433465 1391 ntTSL 3 BASIC17.21■□□□□ 0.35
NUP98P52948 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
NUP98P52948 FAM226B-201ENST00000602508 1490 ntBASIC17.21■□□□□ 0.35
NUP98P52948 CHMP5-202ENST00000419016 1957 ntTSL 2 BASIC17.21■□□□□ 0.35
NUP98P52948 TAGLN3-205ENST00000478951 1301 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
NUP98P52948 MARVELD2-203ENST00000436532 1563 ntTSL 5 BASIC17.21■□□□□ 0.35
NUP98P52948 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
NUP98P52948 TRO-225ENST00000622017 1403 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
NUP98P52948 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
NUP98P52948 CPSF4L-202ENST00000397671 1275 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
NUP98P52948 CDRT15L2-201ENST00000399044 1048 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
NUP98P52948 PRR34-AS1-203ENST00000451166 877 ntTSL 3 BASIC17.21■□□□□ 0.35
NUP98P52948 AC019118.1-201ENST00000454530 435 ntTSL 3 BASIC17.21■□□□□ 0.35
NUP98P52948 AP003168.2-201ENST00000531215 471 ntTSL 3 BASIC17.21■□□□□ 0.35
NUP98P52948 AP000920.1-201ENST00000531824 344 ntBASIC17.21■□□□□ 0.35
NUP98P52948 AC009055.1-201ENST00000562656 781 ntTSL 3 BASIC17.21■□□□□ 0.35
NUP98P52948 AC139099.2-201ENST00000572343 641 ntTSL 3 BASIC17.21■□□□□ 0.35
NUP98P52948 HNRNPA1P16-201ENST00000575692 955 ntBASIC17.21■□□□□ 0.35
NUP98P52948 AC103808.3-201ENST00000579714 598 ntTSL 5 BASIC17.21■□□□□ 0.35
NUP98P52948 Metazoa_SRP.153-201ENST00000620153 341 ntBASIC17.21■□□□□ 0.35
NUP98P52948 GLB1L-202ENST00000392089 2574 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
NUP98P52948 NECTIN1-203ENST00000341398 1377 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
NUP98P52948 CA2-201ENST00000285379 1717 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
NUP98P52948 PSMC5-201ENST00000310144 1579 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
NUP98P52948 RARG-203ENST00000425354 2959 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
NUP98P52948 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
NUP98P52948 MKNK1-204ENST00000371946 2719 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
NUP98P52948 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
NUP98P52948 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
NUP98P52948 TRIB1-203ENST00000520847 1332 ntTSL 2 BASIC17.2■□□□□ 0.34
NUP98P52948 GRHL1-202ENST00000405379 1881 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
NUP98P52948 GLP2R-204ENST00000574745 1882 ntTSL 2 BASIC17.2■□□□□ 0.34
NUP98P52948 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
NUP98P52948 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC17.2■□□□□ 0.34
NUP98P52948 SAP18-201ENST00000382533 2298 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
NUP98P52948 MRPS11-202ENST00000353598 766 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
NUP98P52948 NUDT2-203ENST00000379158 1075 ntAPPRIS P1 TSL 3 BASIC17.2■□□□□ 0.34
NUP98P52948 IL18BP-206ENST00000393707 1037 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
NUP98P52948 KCNE1-202ENST00000399284 666 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
NUP98P52948 AC138409.2-203ENST00000508395 553 ntTSL 4 BASIC17.2■□□□□ 0.34
NUP98P52948 CASP3-205ENST00000517513 964 ntTSL 5 BASIC17.2■□□□□ 0.34
NUP98P52948 PAX5-210ENST00000520281 969 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
NUP98P52948 AC079949.1-201ENST00000541419 505 ntTSL 3 BASIC17.2■□□□□ 0.34
NUP98P52948 BLOC1S1-202ENST00000548556 525 ntTSL 2 BASIC17.2■□□□□ 0.34
NUP98P52948 AF111169.2-201ENST00000553758 721 ntTSL 3 BASIC17.2■□□□□ 0.34
NUP98P52948 AL590235.1-201ENST00000564650 861 ntBASIC17.2■□□□□ 0.34
NUP98P52948 LINC00514-203ENST00000573465 313 ntTSL 5 BASIC17.2■□□□□ 0.34
NUP98P52948 LINC00969-321ENST00000629990 806 ntTSL 5 BASIC17.2■□□□□ 0.34
NUP98P52948 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
NUP98P52948 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
NUP98P52948 ETNPPL-202ENST00000411864 2028 ntAPPRIS ALT1 TSL 1 (best) BASIC17.2■□□□□ 0.34
NUP98P52948 AC099548.2-204ENST00000481651 2106 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
NUP98P52948 YWHAQ-201ENST00000238081 2208 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
NUP98P52948 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
NUP98P52948 DUOXA1-205ENST00000558422 1678 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
NUP98P52948 SLC1A5-202ENST00000434726 1872 ntTSL 2 BASIC17.2■□□□□ 0.34
NUP98P52948 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
NUP98P52948 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
NUP98P52948 CCDC138-203ENST00000412964 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
NUP98P52948 AC007431.1-201ENST00000578662 1412 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
NUP98P52948 KLKP1-203ENST00000600104 1532 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
NUP98P52948 HRH2-202ENST00000377291 2561 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 67.2 ms