Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 BCL2L13-206ENST00000399782 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
SMARCA1P28370 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
SMARCA1P28370 ASB15-207ENST00000540573 1651 ntTSL 2 BASIC16.24■□□□□ 0.19
SMARCA1P28370 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC16.24■□□□□ 0.19
SMARCA1P28370 ABR-228ENST00000574437 3196 ntTSL 5 BASIC16.24■□□□□ 0.19
SMARCA1P28370 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
SMARCA1P28370 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
SMARCA1P28370 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC16.23■□□□□ 0.19
SMARCA1P28370 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SMARCA1P28370 TEX26-AS1-205ENST00000585870 2053 ntTSL 2 BASIC16.23■□□□□ 0.19
SMARCA1P28370 FOXF1-201ENST00000262426 3516 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SMARCA1P28370 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
SMARCA1P28370 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
SMARCA1P28370 DIS3L2-205ENST00000409401 2048 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
SMARCA1P28370 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
SMARCA1P28370 HNRNPA1-201ENST00000330752 1294 ntTSL 5 BASIC16.23■□□□□ 0.19
SMARCA1P28370 MAPK13-202ENST00000373759 1036 ntTSL 5 BASIC16.23■□□□□ 0.19
SMARCA1P28370 MAPK3-204ENST00000395200 997 ntTSL 3 BASIC16.23■□□□□ 0.19
SMARCA1P28370 RANGRF-202ENST00000407006 1074 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
SMARCA1P28370 PSMA1-202ENST00000418988 1266 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
SMARCA1P28370 TMEM243-202ENST00000423734 601 ntTSL 2 BASIC16.23■□□□□ 0.19
SMARCA1P28370 ERP29P1-201ENST00000442902 706 ntBASIC16.23■□□□□ 0.19
SMARCA1P28370 AL606489.1-201ENST00000443515 486 ntTSL 3 BASIC16.23■□□□□ 0.19
SMARCA1P28370 AL109924.1-201ENST00000444586 914 ntTSL 3 BASIC16.23■□□□□ 0.19
SMARCA1P28370 AL355803.1-201ENST00000455524 188 ntTSL 2 BASIC16.23■□□□□ 0.19
SMARCA1P28370 AC108462.1-201ENST00000457467 850 ntTSL 3 BASIC16.23■□□□□ 0.19
SMARCA1P28370 RN7SL767P-201ENST00000493013 295 ntBASIC16.23■□□□□ 0.19
SMARCA1P28370 AC133961.1-201ENST00000503085 762 ntTSL 3 BASIC16.23■□□□□ 0.19
SMARCA1P28370 PGRMC2-206ENST00000512483 1144 ntTSL 5 BASIC16.23■□□□□ 0.19
SMARCA1P28370 TCL1A-205ENST00000555202 717 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SMARCA1P28370 TNNI1-205ENST00000555948 580 ntTSL 5 BASIC16.23■□□□□ 0.19
SMARCA1P28370 AC079328.1-201ENST00000560358 952 ntBASIC16.23■□□□□ 0.19
SMARCA1P28370 AC009093.8-202ENST00000562902 677 ntTSL 2 BASIC16.23■□□□□ 0.19
SMARCA1P28370 DUSP22-213ENST00000605035 1231 ntTSL 2 BASIC16.23■□□□□ 0.19
SMARCA1P28370 AC242426.4-201ENST00000606856 573 ntTSL 5 BASIC16.23■□□□□ 0.19
SMARCA1P28370 HPX-213ENST00000615166 826 ntTSL 5 BASIC16.23■□□□□ 0.19
SMARCA1P28370 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC16.23■□□□□ 0.19
SMARCA1P28370 EVL-201ENST00000392920 1978 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
SMARCA1P28370 ARHGEF1-202ENST00000347545 3091 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
SMARCA1P28370 SUOX-201ENST00000266971 2364 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
SMARCA1P28370 SUOX-208ENST00000548274 2352 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
SMARCA1P28370 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
SMARCA1P28370 ARMCX3-203ENST00000471229 2051 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SMARCA1P28370 SERPINB9P1-202ENST00000545177 1375 ntTSL 3 BASIC16.23■□□□□ 0.19
SMARCA1P28370 PPIL2-202ENST00000398831 2574 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SMARCA1P28370 CNBP-203ENST00000446936 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SMARCA1P28370 CNBP-204ENST00000451728 1641 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
SMARCA1P28370 UBBP4-202ENST00000584755 1459 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SMARCA1P28370 C7orf57-201ENST00000348904 2125 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
SMARCA1P28370 VAC14-AS1-201ENST00000398177 2145 ntTSL 2 BASIC16.22■□□□□ 0.19
SMARCA1P28370 SLC13A5-202ENST00000381074 1738 ntTSL 2 BASIC16.22■□□□□ 0.19
SMARCA1P28370 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC16.22■□□□□ 0.19
SMARCA1P28370 CCNG1-202ENST00000393929 2366 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SMARCA1P28370 PARP3-203ENST00000431474 2360 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
SMARCA1P28370 LINC01230-201ENST00000625222 3017 ntBASIC16.22■□□□□ 0.19
SMARCA1P28370 GPAT3-201ENST00000264409 2625 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SMARCA1P28370 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SMARCA1P28370 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SMARCA1P28370 MSH5-201ENST00000375703 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
SMARCA1P28370 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC16.22■□□□□ 0.19
SMARCA1P28370 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC16.22■□□□□ 0.19
SMARCA1P28370 AC093462.1-201ENST00000621167 1683 ntBASIC16.22■□□□□ 0.19
SMARCA1P28370 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC16.22■□□□□ 0.19
SMARCA1P28370 MTSS1-216ENST00000524090 2166 ntTSL 2 BASIC16.22■□□□□ 0.19
SMARCA1P28370 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC16.22■□□□□ 0.19
SMARCA1P28370 AGAP10P-201ENST00000454844 2418 ntBASIC16.22■□□□□ 0.19
SMARCA1P28370 SOD2-202ENST00000367054 815 ntTSL 2 BASIC16.22■□□□□ 0.19
SMARCA1P28370 LYPLA2-202ENST00000374502 1072 ntTSL 2 BASIC16.22■□□□□ 0.19
SMARCA1P28370 IGHV1-3-201ENST00000390595 395 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
SMARCA1P28370 ACTG2-204ENST00000409918 927 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SMARCA1P28370 GUSBP10-201ENST00000417412 665 ntBASIC16.22■□□□□ 0.19
SMARCA1P28370 AC013448.2-201ENST00000440341 787 ntTSL 5 BASIC16.22■□□□□ 0.19
SMARCA1P28370 LINC02028-203ENST00000443776 453 ntTSL 3 BASIC16.22■□□□□ 0.19
SMARCA1P28370 FTLP1-201ENST00000449155 526 ntBASIC16.22■□□□□ 0.19
SMARCA1P28370 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC16.22■□□□□ 0.19
SMARCA1P28370 AC093904.2-201ENST00000495580 418 ntTSL 3 BASIC16.22■□□□□ 0.19
SMARCA1P28370 AL691482.3-201ENST00000504773 987 ntTSL 2 BASIC16.22■□□□□ 0.19
SMARCA1P28370 WSPAR-201ENST00000513561 683 ntTSL 3 BASIC16.22■□□□□ 0.19
SMARCA1P28370 AC129102.1-201ENST00000535755 525 ntTSL 4 BASIC16.22■□□□□ 0.19
SMARCA1P28370 FOS-204ENST00000554617 796 ntTSL 2 BASIC16.22■□□□□ 0.19
SMARCA1P28370 LINC01500-204ENST00000556815 752 ntTSL 3 BASIC16.22■□□□□ 0.19
SMARCA1P28370 AL031713.1-201ENST00000564813 661 ntBASIC16.22■□□□□ 0.19
SMARCA1P28370 AC015917.2-201ENST00000580714 493 ntTSL 3 BASIC16.22■□□□□ 0.19
SMARCA1P28370 Metazoa_SRP.69-201ENST00000615730 281 ntBASIC16.22■□□□□ 0.19
SMARCA1P28370 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
SMARCA1P28370 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC16.22■□□□□ 0.19
SMARCA1P28370 MROH1-209ENST00000534366 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
SMARCA1P28370 KAT7-204ENST00000454930 1774 ntTSL 2 BASIC16.22■□□□□ 0.19
SMARCA1P28370 FMO6P-201ENST00000236166 1620 ntBASIC16.22■□□□□ 0.19
SMARCA1P28370 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SMARCA1P28370 OSBPL5-203ENST00000389989 3619 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SMARCA1P28370 NCF4-202ENST00000397147 1641 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SMARCA1P28370 LDB3-207ENST00000542786 1889 ntTSL 2 BASIC16.22■□□□□ 0.19
SMARCA1P28370 DENND1C-202ENST00000543576 2395 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
SMARCA1P28370 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
SMARCA1P28370 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC16.22■□□□□ 0.19
SMARCA1P28370 COQ7-209ENST00000569127 2575 ntTSL 2 BASIC16.22■□□□□ 0.19
SMARCA1P28370 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SMARCA1P28370 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
SMARCA1P28370 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms