Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC10.97□□□□□ -0.65
HLA-DMBP28068 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC10.97□□□□□ -0.65
HLA-DMBP28068 IGHVIII-5-2-201ENST00000522505 261 ntBASIC10.97□□□□□ -0.65
HLA-DMBP28068 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC10.97□□□□□ -0.65
HLA-DMBP28068 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC10.97□□□□□ -0.65
HLA-DMBP28068 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC10.97□□□□□ -0.65
HLA-DMBP28068 WNT11-204ENST00000621122 789 ntTSL 5 BASIC10.97□□□□□ -0.65
HLA-DMBP28068 AC138951.2-201ENST00000623455 1161 ntBASIC10.97□□□□□ -0.65
HLA-DMBP28068 AC132938.4-201ENST00000623835 848 ntBASIC10.97□□□□□ -0.65
HLA-DMBP28068 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC10.97□□□□□ -0.65
HLA-DMBP28068 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC10.97□□□□□ -0.65
HLA-DMBP28068 STXBP6-202ENST00000396700 4021 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
HLA-DMBP28068 ADAMTSL4-201ENST00000271643 4250 ntAPPRIS P3 TSL 5 BASIC10.97□□□□□ -0.65
HLA-DMBP28068 RGS22-201ENST00000360863 4296 ntAPPRIS P3 TSL 1 (best) BASIC10.97□□□□□ -0.65
HLA-DMBP28068 AC015818.8-201ENST00000587907 1519 ntBASIC10.97□□□□□ -0.65
HLA-DMBP28068 REV3L-207ENST00000435970 10943 ntTSL 2 BASIC10.97□□□□□ -0.65
HLA-DMBP28068 KBTBD7-201ENST00000379483 4734 ntAPPRIS P1 BASIC10.97□□□□□ -0.65
HLA-DMBP28068 RTFDC1-203ENST00000395881 1572 ntTSL 2 BASIC10.97□□□□□ -0.65
HLA-DMBP28068 CDK3-201ENST00000425876 1582 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
HLA-DMBP28068 CDK3-202ENST00000448471 1570 ntAPPRIS P1 TSL 5 BASIC10.97□□□□□ -0.65
HLA-DMBP28068 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC10.97□□□□□ -0.65
HLA-DMBP28068 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
HLA-DMBP28068 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC10.97□□□□□ -0.65
HLA-DMBP28068 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC10.97□□□□□ -0.65
HLA-DMBP28068 CYP1B1-AS1-201ENST00000413828 1781 ntTSL 5 BASIC10.97□□□□□ -0.65
HLA-DMBP28068 SLC6A2-205ENST00000566163 1759 ntTSL 5 BASIC10.97□□□□□ -0.65
HLA-DMBP28068 SMARCA4-202ENST00000413806 5512 ntTSL 5 BASIC10.97□□□□□ -0.65
HLA-DMBP28068 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC10.97□□□□□ -0.65
HLA-DMBP28068 CASP8-202ENST00000264275 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC10.97□□□□□ -0.65
HLA-DMBP28068 MCRS1-201ENST00000343810 1928 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
HLA-DMBP28068 TCN2-202ENST00000405742 1936 ntAPPRIS ALT2 TSL 5 BASIC10.97□□□□□ -0.65
HLA-DMBP28068 ABAT-215ENST00000569156 1911 ntTSL 1 (best) BASIC10.97□□□□□ -0.65
HLA-DMBP28068 SERPING1-201ENST00000278407 2002 ntAPPRIS P2 TSL 1 (best) BASIC10.97□□□□□ -0.65
HLA-DMBP28068 DDO-202ENST00000368924 2130 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
HLA-DMBP28068 PLIN3-207ENST00000592528 2154 ntTSL 2 BASIC10.97□□□□□ -0.65
HLA-DMBP28068 RARG-202ENST00000394426 2640 ntTSL 1 (best) BASIC10.97□□□□□ -0.65
HLA-DMBP28068 RBBP8NL-201ENST00000252998 2793 ntAPPRIS P1 TSL 2 BASIC10.97□□□□□ -0.65
HLA-DMBP28068 FZD6-206ENST00000523739 2774 ntTSL 2 BASIC10.97□□□□□ -0.65
HLA-DMBP28068 THTPA-201ENST00000288014 2860 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
HLA-DMBP28068 NDRG2-251ENST00000556147 2880 ntAPPRIS P4 TSL 5 BASIC10.97□□□□□ -0.65
HLA-DMBP28068 CYP51A1-AS1-201ENST00000453068 2957 ntTSL 5 BASIC10.97□□□□□ -0.65
HLA-DMBP28068 TMEM63B-202ENST00000323267 3198 ntAPPRIS P1 TSL 5 BASIC10.97□□□□□ -0.65
HLA-DMBP28068 AMER2-201ENST00000357816 10055 ntTSL 2 BASIC10.97□□□□□ -0.65
HLA-DMBP28068 PDK2-203ENST00000503176 3440 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
HLA-DMBP28068 ZC3H18-201ENST00000301011 3729 ntAPPRIS P2 TSL 1 (best) BASIC10.97□□□□□ -0.65
HLA-DMBP28068 SYT1-204ENST00000457153 4592 ntAPPRIS ALT1 TSL 1 (best) BASIC10.96□□□□□ -0.65
HLA-DMBP28068 PWWP2A-202ENST00000456329 3991 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
HLA-DMBP28068 ZBTB20-215ENST00000481632 2800 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
HLA-DMBP28068 AC138894.1-201ENST00000635887 2824 ntTSL 5 BASIC10.96□□□□□ -0.65
HLA-DMBP28068 INMT-201ENST00000013222 2559 ntAPPRIS P3 TSL 1 (best) BASIC10.96□□□□□ -0.65
HLA-DMBP28068 SNHG28-201ENST00000368102 2501 ntAPPRIS P1 TSL 2 BASIC10.96□□□□□ -0.65
HLA-DMBP28068 CLCN4-201ENST00000380829 2418 ntTSL 5 BASIC10.96□□□□□ -0.65
HLA-DMBP28068 REC8-213ENST00000620473 2405 ntAPPRIS P1 TSL 2 BASIC10.96□□□□□ -0.65
HLA-DMBP28068 LDB3-209ENST00000623056 2314 ntTSL 5 BASIC10.96□□□□□ -0.65
HLA-DMBP28068 ZNF100-201ENST00000305570 2283 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
HLA-DMBP28068 ZNF135-205ENST00000511556 2253 ntAPPRIS P3 TSL 2 BASIC10.96□□□□□ -0.65
HLA-DMBP28068 BEAN1-201ENST00000299694 2160 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
HLA-DMBP28068 PRIMPOL-211ENST00000515774 2007 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
HLA-DMBP28068 PRSS16-203ENST00000421826 1949 ntTSL 2 BASIC10.96□□□□□ -0.65
HLA-DMBP28068 C7orf57-204ENST00000435376 1925 ntAPPRIS ALT2 TSL 1 (best) BASIC10.96□□□□□ -0.65
HLA-DMBP28068 C7orf57-206ENST00000539619 1927 ntAPPRIS ALT2 TSL 5 BASIC10.96□□□□□ -0.65
HLA-DMBP28068 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
HLA-DMBP28068 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC10.96□□□□□ -0.65
HLA-DMBP28068 ITGA6-202ENST00000409080 5306 ntTSL 2 BASIC10.96□□□□□ -0.65
HLA-DMBP28068 FRMD4B-201ENST00000398540 5060 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
HLA-DMBP28068 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC10.96□□□□□ -0.65
HLA-DMBP28068 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC10.96□□□□□ -0.65
HLA-DMBP28068 KRT8P4-201ENST00000509735 1454 ntBASIC10.96□□□□□ -0.65
HLA-DMBP28068 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC10.96□□□□□ -0.65
HLA-DMBP28068 AC009093.10-201ENST00000641956 1442 ntBASIC10.96□□□□□ -0.65
HLA-DMBP28068 KCNJ9-201ENST00000368088 4170 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
HLA-DMBP28068 ANKRD19P-201ENST00000338192 862 ntBASIC10.96□□□□□ -0.65
HLA-DMBP28068 SNRPC-202ENST00000374017 1054 ntTSL 2 BASIC10.96□□□□□ -0.65
HLA-DMBP28068 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
HLA-DMBP28068 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC10.96□□□□□ -0.65
HLA-DMBP28068 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
HLA-DMBP28068 HNRNPA1P27-201ENST00000412087 955 ntBASIC10.96□□□□□ -0.65
HLA-DMBP28068 USB1-202ENST00000423271 1217 ntTSL 2 BASIC10.96□□□□□ -0.65
HLA-DMBP28068 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC10.96□□□□□ -0.65
HLA-DMBP28068 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC10.96□□□□□ -0.65
HLA-DMBP28068 AC119751.2-201ENST00000504529 210 ntBASIC10.96□□□□□ -0.65
HLA-DMBP28068 CDC23-208ENST00000505120 455 ntTSL 3 BASIC10.96□□□□□ -0.65
HLA-DMBP28068 COX5BP1-201ENST00000507622 393 ntBASIC10.96□□□□□ -0.65
HLA-DMBP28068 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC10.96□□□□□ -0.65
HLA-DMBP28068 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC10.96□□□□□ -0.65
HLA-DMBP28068 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC10.96□□□□□ -0.65
HLA-DMBP28068 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC10.96□□□□□ -0.65
HLA-DMBP28068 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC10.96□□□□□ -0.65
HLA-DMBP28068 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC10.96□□□□□ -0.65
HLA-DMBP28068 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC10.96□□□□□ -0.65
HLA-DMBP28068 AL358472.3-201ENST00000608147 415 ntBASIC10.96□□□□□ -0.65
HLA-DMBP28068 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC10.96□□□□□ -0.65
HLA-DMBP28068 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC10.96□□□□□ -0.65
HLA-DMBP28068 AC027601.3-201ENST00000622907 509 ntBASIC10.96□□□□□ -0.65
HLA-DMBP28068 EDEM3-201ENST00000318130 6898 ntAPPRIS P2 TSL 1 (best) BASIC10.96□□□□□ -0.66
HLA-DMBP28068 CSF2RB-203ENST00000406230 2895 ntAPPRIS ALT2 TSL 1 (best) BASIC10.96□□□□□ -0.66
HLA-DMBP28068 AC073869.1-201ENST00000415574 2762 ntBASIC10.96□□□□□ -0.66
HLA-DMBP28068 ATP6V0A4-202ENST00000353492 2709 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.66
HLA-DMBP28068 CABP4-201ENST00000325656 2559 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.66
HLA-DMBP28068 TMEM201-201ENST00000340305 3851 ntTSL 1 (best) BASIC10.96□□□□□ -0.66
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms