Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 MAGEA4-204ENST00000370340 1773 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
COL5A1P20908 AL589669.1-201ENST00000639829 1506 ntTSL 5 BASIC13.29□□□□□ -0.28
COL5A1P20908 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC13.29□□□□□ -0.28
COL5A1P20908 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
COL5A1P20908 BPIFA4P-201ENST00000375465 1203 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
COL5A1P20908 AQP7-202ENST00000377425 1068 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
COL5A1P20908 CPSF4L-202ENST00000397671 1275 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
COL5A1P20908 FDPSP7-201ENST00000429043 1054 ntBASIC13.29□□□□□ -0.28
COL5A1P20908 TTTY18-201ENST00000438677 221 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
COL5A1P20908 AL512288.1-201ENST00000448015 491 ntTSL 5 BASIC13.29□□□□□ -0.28
COL5A1P20908 RNU1-80P-201ENST00000459500 161 ntBASIC13.29□□□□□ -0.28
COL5A1P20908 RN7SL523P-201ENST00000484401 298 ntBASIC13.29□□□□□ -0.28
COL5A1P20908 RPL29P2-201ENST00000488409 460 ntBASIC13.29□□□□□ -0.28
COL5A1P20908 AC112484.2-201ENST00000498297 1298 ntTSL 3 BASIC13.29□□□□□ -0.28
COL5A1P20908 C11orf58-207ENST00000525684 575 ntTSL 2 BASIC13.29□□□□□ -0.28
COL5A1P20908 C11orf58-209ENST00000528634 776 ntTSL 5 BASIC13.29□□□□□ -0.28
COL5A1P20908 AC007298.2-201ENST00000551849 862 ntTSL 3 BASIC13.29□□□□□ -0.28
COL5A1P20908 RORA-AS1-202ENST00000558140 869 ntTSL 2 BASIC13.29□□□□□ -0.28
COL5A1P20908 AC092756.1-201ENST00000560248 448 ntTSL 3 BASIC13.29□□□□□ -0.28
COL5A1P20908 RN7SL134P-201ENST00000579756 303 ntBASIC13.29□□□□□ -0.28
COL5A1P20908 AC123912.6-201ENST00000612657 315 ntBASIC13.29□□□□□ -0.28
COL5A1P20908 DSTN-203ENST00000474024 1853 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
COL5A1P20908 ELOA2-202ENST00000620522 1641 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
COL5A1P20908 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
COL5A1P20908 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
COL5A1P20908 PISD-209ENST00000439502 1963 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
COL5A1P20908 PHTF2-204ENST00000415251 1738 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
COL5A1P20908 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
COL5A1P20908 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC13.29□□□□□ -0.28
COL5A1P20908 SC5D-202ENST00000392789 2258 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
COL5A1P20908 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC13.29□□□□□ -0.28
COL5A1P20908 NME7-203ENST00000472647 1590 ntAPPRIS ALT2 TSL 2 BASIC13.29□□□□□ -0.28
COL5A1P20908 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
COL5A1P20908 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC13.28□□□□□ -0.28
COL5A1P20908 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
COL5A1P20908 SUCLA2-205ENST00000470760 1445 ntTSL 2 BASIC13.28□□□□□ -0.28
COL5A1P20908 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC13.28□□□□□ -0.28
COL5A1P20908 MAGEA4-201ENST00000276344 1724 ntAPPRIS P1 TSL 2 BASIC13.28□□□□□ -0.28
COL5A1P20908 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
COL5A1P20908 ADAM23-202ENST00000374415 2714 ntAPPRIS ALT1 TSL 5 BASIC13.28□□□□□ -0.28
COL5A1P20908 MANEA-202ENST00000369293 1076 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
COL5A1P20908 DPPA5-201ENST00000370370 679 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
COL5A1P20908 CHEK2-203ENST00000382565 696 ntTSL 5 BASIC13.28□□□□□ -0.28
COL5A1P20908 KRTAP2-3-201ENST00000391418 875 ntAPPRIS P1 BASIC13.28□□□□□ -0.28
COL5A1P20908 SLC12A9-AS1-201ENST00000412754 369 ntTSL 3 BASIC13.28□□□□□ -0.28
COL5A1P20908 AL121656.1-201ENST00000440786 482 ntTSL 5 BASIC13.28□□□□□ -0.28
COL5A1P20908 SMAD1-AS1-201ENST00000513542 481 ntTSL 2 BASIC13.28□□□□□ -0.28
COL5A1P20908 RNA5SP420-201ENST00000516997 137 ntBASIC13.28□□□□□ -0.28
COL5A1P20908 AC103736.1-201ENST00000524410 605 ntTSL 3 BASIC13.28□□□□□ -0.28
COL5A1P20908 AC004923.3-201ENST00000527532 355 ntBASIC13.28□□□□□ -0.28
COL5A1P20908 MYMX-201ENST00000573382 817 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
COL5A1P20908 RN7SL602P-201ENST00000578326 324 ntBASIC13.28□□□□□ -0.28
COL5A1P20908 RN7SL718P-201ENST00000581254 303 ntBASIC13.28□□□□□ -0.28
COL5A1P20908 PDCD6-213ENST00000618970 931 ntTSL 3 BASIC13.28□□□□□ -0.28
COL5A1P20908 HIST1H3B-201ENST00000621411 411 ntAPPRIS P1 BASIC13.28□□□□□ -0.28
COL5A1P20908 GNG14-201ENST00000640117 210 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
COL5A1P20908 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
COL5A1P20908 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
COL5A1P20908 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC13.28□□□□□ -0.28
COL5A1P20908 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
COL5A1P20908 TUBB4AP1-201ENST00000450755 1325 ntBASIC13.28□□□□□ -0.28
COL5A1P20908 JPT1-202ENST00000356033 1519 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
COL5A1P20908 Z82195.2-202ENST00000458525 1646 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
COL5A1P20908 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
COL5A1P20908 POLL-206ENST00000370172 2308 ntTSL 2 BASIC13.28□□□□□ -0.28
COL5A1P20908 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC13.27□□□□□ -0.28
COL5A1P20908 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
COL5A1P20908 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC13.27□□□□□ -0.28
COL5A1P20908 AIG1-203ENST00000367596 559 ntTSL 2 BASIC13.27□□□□□ -0.28
COL5A1P20908 KCNK15-AS1-203ENST00000427598 862 ntTSL 2 BASIC13.27□□□□□ -0.28
COL5A1P20908 STAG3L3-203ENST00000436857 1033 ntTSL 2 BASIC13.27□□□□□ -0.28
COL5A1P20908 AC007279.1-201ENST00000448547 837 ntBASIC13.27□□□□□ -0.28
COL5A1P20908 BX072579.1-201ENST00000449453 344 ntTSL 3 BASIC13.27□□□□□ -0.28
COL5A1P20908 TREX1-203ENST00000456089 629 ntTSL 3 BASIC13.27□□□□□ -0.28
COL5A1P20908 RN7SL578P-201ENST00000477781 283 ntBASIC13.27□□□□□ -0.28
COL5A1P20908 AF274856.1-202ENST00000509345 871 ntTSL 4 BASIC13.27□□□□□ -0.28
COL5A1P20908 AC105133.1-201ENST00000559749 742 ntTSL 3 BASIC13.27□□□□□ -0.28
COL5A1P20908 AC091304.3-201ENST00000566500 716 ntBASIC13.27□□□□□ -0.28
COL5A1P20908 RN7SL524P-201ENST00000581152 300 ntBASIC13.27□□□□□ -0.28
COL5A1P20908 AL353622.2-201ENST00000605846 425 ntBASIC13.27□□□□□ -0.28
COL5A1P20908 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC13.27□□□□□ -0.28
COL5A1P20908 FCRL1-207ENST00000491942 1554 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.28
COL5A1P20908 NRADDP-202ENST00000641269 1585 ntBASIC13.27□□□□□ -0.28
COL5A1P20908 ETV4-202ENST00000393664 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
COL5A1P20908 ECE1-201ENST00000264205 2381 ntAPPRIS P4 TSL 1 (best) BASIC13.27□□□□□ -0.28
COL5A1P20908 UBA1-202ENST00000377269 2497 ntTSL 2 BASIC13.27□□□□□ -0.28
COL5A1P20908 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC13.27□□□□□ -0.28
COL5A1P20908 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.28
COL5A1P20908 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
COL5A1P20908 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
COL5A1P20908 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC13.27□□□□□ -0.28
COL5A1P20908 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC13.27□□□□□ -0.28
COL5A1P20908 CASP8-202ENST00000264275 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.28
COL5A1P20908 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
COL5A1P20908 FAHD2B-201ENST00000272610 1305 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
COL5A1P20908 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC13.27□□□□□ -0.29
COL5A1P20908 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC13.27□□□□□ -0.29
COL5A1P20908 HARS2-201ENST00000230771 2483 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
COL5A1P20908 AGAP9-201ENST00000452145 2387 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
COL5A1P20908 LILRB3-201ENST00000245620 2066 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 44.7 ms