Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 CHL1-AS2-203ENST00000452919 726 ntTSL 2 BASIC14.24□□□□□ -0.13
TRIM39Q9HCM9 AC005234.1-201ENST00000457851 434 ntTSL 3 BASIC14.24□□□□□ -0.13
TRIM39Q9HCM9 TMEM91-211ENST00000544232 725 ntTSL 3 BASIC14.24□□□□□ -0.13
TRIM39Q9HCM9 AC008133.1-201ENST00000584688 557 ntTSL 4 BASIC14.24□□□□□ -0.13
TRIM39Q9HCM9 AP001505.2-201ENST00000616815 443 ntBASIC14.24□□□□□ -0.13
TRIM39Q9HCM9 LINC01669-205ENST00000624561 713 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
TRIM39Q9HCM9 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC14.24□□□□□ -0.13
TRIM39Q9HCM9 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
TRIM39Q9HCM9 DDN-201ENST00000421952 3749 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
TRIM39Q9HCM9 ABR-205ENST00000544583 5595 ntTSL 2 BASIC14.24□□□□□ -0.13
TRIM39Q9HCM9 PODN-207ENST00000618387 3065 ntAPPRIS ALT2 TSL 2 BASIC14.24□□□□□ -0.13
TRIM39Q9HCM9 ATP2B3-201ENST00000263519 6420 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
TRIM39Q9HCM9 ZSCAN5A-206ENST00000587492 1542 ntTSL 2 BASIC14.24□□□□□ -0.13
TRIM39Q9HCM9 ANXA9-201ENST00000368947 1826 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
TRIM39Q9HCM9 BAK1-201ENST00000360661 2132 ntTSL 5 BASIC14.24□□□□□ -0.13
TRIM39Q9HCM9 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
TRIM39Q9HCM9 GCM2-201ENST00000379491 2441 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
TRIM39Q9HCM9 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
TRIM39Q9HCM9 OSBPL8-201ENST00000261183 7239 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
TRIM39Q9HCM9 OSBPL8-218ENST00000611266 7239 ntAPPRIS ALT1 TSL 1 (best) BASIC14.24□□□□□ -0.13
TRIM39Q9HCM9 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
TRIM39Q9HCM9 IKZF1-218ENST00000615491 5637 ntTSL 5 BASIC14.24□□□□□ -0.13
TRIM39Q9HCM9 ZNRD1ASP-217ENST00000437417 1497 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
TRIM39Q9HCM9 ZNF618-201ENST00000288466 9109 ntAPPRIS P3 TSL 2 BASIC14.24□□□□□ -0.13
TRIM39Q9HCM9 SMOC2-201ENST00000354536 3150 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
TRIM39Q9HCM9 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
TRIM39Q9HCM9 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
TRIM39Q9HCM9 ENO3-202ENST00000518175 1448 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
TRIM39Q9HCM9 PPT1-205ENST00000449045 1957 ntTSL 2 BASIC14.23□□□□□ -0.13
TRIM39Q9HCM9 SMARCA2-214ENST00000450198 5602 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
TRIM39Q9HCM9 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
TRIM39Q9HCM9 CCNH-201ENST00000256897 1378 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
TRIM39Q9HCM9 FAM219A-203ENST00000379080 3591 ntTSL 2 BASIC14.23□□□□□ -0.13
TRIM39Q9HCM9 ZNF815P-201ENST00000421890 1352 ntTSL 2 BASIC14.23□□□□□ -0.13
TRIM39Q9HCM9 ARHGAP23P1-201ENST00000562773 1937 ntBASIC14.23□□□□□ -0.13
TRIM39Q9HCM9 PPP6R2-204ENST00000395744 3293 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
TRIM39Q9HCM9 KCND3-201ENST00000302127 2659 ntAPPRIS ALT1 TSL 5 BASIC14.23□□□□□ -0.13
TRIM39Q9HCM9 TCHH-201ENST00000368804 6900 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
TRIM39Q9HCM9 RP1L1-202ENST00000382483 7973 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
TRIM39Q9HCM9 MLXIPL-205ENST00000429400 3173 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
TRIM39Q9HCM9 IRAK3-201ENST00000261233 8663 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
TRIM39Q9HCM9 LINC01305-201ENST00000420866 3123 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
TRIM39Q9HCM9 NDFIP2-205ENST00000612570 4648 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
TRIM39Q9HCM9 WARS2-202ENST00000369426 2811 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
TRIM39Q9HCM9 JTB-202ENST00000356648 1040 ntTSL 2 BASIC14.23□□□□□ -0.13
TRIM39Q9HCM9 DKFZp779M0652-201ENST00000378779 649 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
TRIM39Q9HCM9 SLC25A24P2-201ENST00000415059 510 ntBASIC14.23□□□□□ -0.13
TRIM39Q9HCM9 ISCA2P1-201ENST00000425548 448 ntBASIC14.23□□□□□ -0.13
TRIM39Q9HCM9 AC092580.1-201ENST00000433998 658 ntBASIC14.23□□□□□ -0.13
TRIM39Q9HCM9 POU5F1P2-201ENST00000521750 823 ntBASIC14.23□□□□□ -0.13
TRIM39Q9HCM9 AC024681.1-201ENST00000521917 487 ntBASIC14.23□□□□□ -0.13
TRIM39Q9HCM9 ATP6V1D-206ENST00000554236 888 ntTSL 5 BASIC14.23□□□□□ -0.13
TRIM39Q9HCM9 AL133523.1-201ENST00000554537 331 ntTSL 3 BASIC14.23□□□□□ -0.13
TRIM39Q9HCM9 TCL1A-208ENST00000556450 872 ntAPPRIS P1 TSL 3 BASIC14.23□□□□□ -0.13
TRIM39Q9HCM9 IGHV3OR16-16-201ENST00000563644 343 ntBASIC14.23□□□□□ -0.13
TRIM39Q9HCM9 ADGRE3-204ENST00000595472 486 ntTSL 3 BASIC14.23□□□□□ -0.13
TRIM39Q9HCM9 RPS5-209ENST00000601521 1203 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
TRIM39Q9HCM9 C17orf50-202ENST00000604830 477 ntTSL 3 BASIC14.23□□□□□ -0.13
TRIM39Q9HCM9 BX537318.1-201ENST00000608290 1207 ntTSL 5 BASIC14.23□□□□□ -0.13
TRIM39Q9HCM9 AC138627.1-207ENST00000641560 1006 ntBASIC14.23□□□□□ -0.13
TRIM39Q9HCM9 RASGEF1B-202ENST00000335927 1756 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
TRIM39Q9HCM9 PHF24-201ENST00000242315 5718 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
TRIM39Q9HCM9 NOX5-203ENST00000448182 2498 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
TRIM39Q9HCM9 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
TRIM39Q9HCM9 SMAD2-212ENST00000591214 1714 ntTSL 2 BASIC14.23□□□□□ -0.13
TRIM39Q9HCM9 CYP4B1-202ENST00000371919 1494 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
TRIM39Q9HCM9 CEP131-208ENST00000575907 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
TRIM39Q9HCM9 FRZB-201ENST00000295113 3162 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
TRIM39Q9HCM9 LHX6-207ENST00000541397 2942 ntTSL 2 BASIC14.23□□□□□ -0.13
TRIM39Q9HCM9 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC14.23□□□□□ -0.13
TRIM39Q9HCM9 C22orf34-204ENST00000414287 2197 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
TRIM39Q9HCM9 SEZ6L-209ENST00000529632 6534 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
TRIM39Q9HCM9 LRRFIP1-204ENST00000392000 3365 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
TRIM39Q9HCM9 MCRS1-211ENST00000550165 1936 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
TRIM39Q9HCM9 RCSD1-202ENST00000367854 3135 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
TRIM39Q9HCM9 AC005324.3-201ENST00000455584 5514 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
TRIM39Q9HCM9 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
TRIM39Q9HCM9 ABI2-215ENST00000430418 1676 ntTSL 5 BASIC14.23□□□□□ -0.13
TRIM39Q9HCM9 SVOPL-201ENST00000288513 1413 ntTSL 2 BASIC14.23□□□□□ -0.13
TRIM39Q9HCM9 KIAA1614-AS1-201ENST00000415647 1440 ntTSL 2 BASIC14.23□□□□□ -0.13
TRIM39Q9HCM9 AGAP9-201ENST00000452145 2387 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
TRIM39Q9HCM9 PRICKLE1-201ENST00000345127 5902 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
TRIM39Q9HCM9 AC022007.1-201ENST00000383808 1897 ntTSL 2 BASIC14.23□□□□□ -0.13
TRIM39Q9HCM9 AC012617.1-204ENST00000586340 2305 ntBASIC14.23□□□□□ -0.13
TRIM39Q9HCM9 LINC01165-201ENST00000445190 1623 ntBASIC14.23□□□□□ -0.13
TRIM39Q9HCM9 IL20RA-201ENST00000316649 3485 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
TRIM39Q9HCM9 EP400NL-206ENST00000446190 3697 ntTSL 2 BASIC14.22□□□□□ -0.13
TRIM39Q9HCM9 NXPH1-201ENST00000405863 2921 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
TRIM39Q9HCM9 ZNF239-203ENST00000426961 2027 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
TRIM39Q9HCM9 CD59-201ENST00000351554 1775 ntAPPRIS P2 TSL 2 BASIC14.22□□□□□ -0.13
TRIM39Q9HCM9 TMEM106A-202ENST00000541594 1330 ntTSL 2 BASIC14.22□□□□□ -0.13
TRIM39Q9HCM9 TDRD12-202ENST00000444215 3934 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
TRIM39Q9HCM9 PTPN23-201ENST00000265562 5244 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
TRIM39Q9HCM9 DNAAF5-202ENST00000403952 1907 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
TRIM39Q9HCM9 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
TRIM39Q9HCM9 CBFA2T3-201ENST00000268679 4477 ntAPPRIS P4 TSL 1 (best) BASIC14.22□□□□□ -0.13
TRIM39Q9HCM9 AL662890.1-201ENST00000396818 632 ntBASIC14.22□□□□□ -0.13
TRIM39Q9HCM9 AL672291.1-201ENST00000417047 462 ntTSL 3 BASIC14.22□□□□□ -0.13
TRIM39Q9HCM9 MSRA-203ENST00000441698 788 ntTSL 2 BASIC14.22□□□□□ -0.13
TRIM39Q9HCM9 AL133466.1-201ENST00000447582 150 ntBASIC14.22□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms