Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AL512324.3-201ENST00000619383 882 ntBASIC17.04■□□□□ 0.32
CCDC88AQ3V6T2 LINC01012-203ENST00000628762 743 ntTSL 5 BASIC17.04■□□□□ 0.32
CCDC88AQ3V6T2 PSMA6-217ENST00000628955 364 ntTSL 5 BASIC17.04■□□□□ 0.32
CCDC88AQ3V6T2 LINC02498-201ENST00000635390 1065 ntTSL 5 BASIC17.04■□□□□ 0.32
CCDC88AQ3V6T2 CSAG2-203ENST00000638741 844 ntAPPRIS P5 TSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC88AQ3V6T2 COX4I1-208ENST00000564903 1481 ntTSL 2 BASIC17.04■□□□□ 0.32
CCDC88AQ3V6T2 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC88AQ3V6T2 C2orf68-201ENST00000306336 2837 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC88AQ3V6T2 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC88AQ3V6T2 SULT1A2-202ENST00000395630 1322 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
CCDC88AQ3V6T2 SHMT1P1-201ENST00000419974 1312 ntBASIC17.04■□□□□ 0.32
CCDC88AQ3V6T2 FAM96A-203ENST00000557835 1536 ntTSL 2 BASIC17.04■□□□□ 0.32
CCDC88AQ3V6T2 SMAD2-212ENST00000591214 1714 ntTSL 2 BASIC17.04■□□□□ 0.32
CCDC88AQ3V6T2 MARK2-206ENST00000425897 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC88AQ3V6T2 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC17.04■□□□□ 0.32
CCDC88AQ3V6T2 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC88AQ3V6T2 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC17.04■□□□□ 0.32
CCDC88AQ3V6T2 ZNF239-203ENST00000426961 2027 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
CCDC88AQ3V6T2 BARX1-AS1-201ENST00000453045 1445 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC88AQ3V6T2 BCL2L12-211ENST00000614495 1402 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC88AQ3V6T2 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC17.03■□□□□ 0.32
CCDC88AQ3V6T2 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
CCDC88AQ3V6T2 CELA3A-201ENST00000290122 887 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC88AQ3V6T2 BPIFA4P-201ENST00000375465 1203 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC88AQ3V6T2 KRT18P33-201ENST00000398525 1043 ntBASIC17.03■□□□□ 0.32
CCDC88AQ3V6T2 CDIPT-AS1-202ENST00000565014 729 ntTSL 2 BASIC17.03■□□□□ 0.32
CCDC88AQ3V6T2 AL353658.2-201ENST00000629794 519 ntTSL 5 BASIC17.03■□□□□ 0.32
CCDC88AQ3V6T2 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC88AQ3V6T2 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC88AQ3V6T2 HLA-DPA1-242ENST00000419277 1704 ntAPPRIS P2 BASIC17.03■□□□□ 0.32
CCDC88AQ3V6T2 CLTCL1-212ENST00000622493 1714 ntTSL 2 BASIC17.03■□□□□ 0.32
CCDC88AQ3V6T2 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
CCDC88AQ3V6T2 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC88AQ3V6T2 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC88AQ3V6T2 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
CCDC88AQ3V6T2 AC015909.5-201ENST00000624336 2266 ntBASIC17.03■□□□□ 0.32
CCDC88AQ3V6T2 ECI2-201ENST00000361538 1380 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC88AQ3V6T2 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC88AQ3V6T2 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC17.03■□□□□ 0.32
CCDC88AQ3V6T2 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
CCDC88AQ3V6T2 DDX19B-213ENST00000568625 1681 ntTSL 2 BASIC17.03■□□□□ 0.32
CCDC88AQ3V6T2 CLUL1-202ENST00000400606 1943 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC88AQ3V6T2 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC88AQ3V6T2 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC88AQ3V6T2 AAAS-202ENST00000394384 1703 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC88AQ3V6T2 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC17.03■□□□□ 0.32
CCDC88AQ3V6T2 LINC00479-201ENST00000412102 2033 ntTSL 2 BASIC17.03■□□□□ 0.32
CCDC88AQ3V6T2 AIFM1-203ENST00000346424 1200 ntTSL 2 BASIC17.03■□□□□ 0.32
CCDC88AQ3V6T2 NPPA-202ENST00000376480 855 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC88AQ3V6T2 TONSL-AS1-201ENST00000442850 428 ntTSL 5 BASIC17.03■□□□□ 0.32
CCDC88AQ3V6T2 HNRNPA1P10-201ENST00000444945 962 ntBASIC17.03■□□□□ 0.32
CCDC88AQ3V6T2 RN7SL684P-201ENST00000465665 294 ntBASIC17.03■□□□□ 0.32
CCDC88AQ3V6T2 AC105133.1-201ENST00000559749 742 ntTSL 3 BASIC17.03■□□□□ 0.32
CCDC88AQ3V6T2 NPPA-203ENST00000610706 849 ntAPPRIS ALT1 TSL 5 BASIC17.03■□□□□ 0.32
CCDC88AQ3V6T2 AL031673.1-201ENST00000611460 466 ntBASIC17.03■□□□□ 0.32
CCDC88AQ3V6T2 BAP1-211ENST00000615113 489 ntBASIC17.03■□□□□ 0.32
CCDC88AQ3V6T2 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC17.03■□□□□ 0.32
CCDC88AQ3V6T2 FAM149A-203ENST00000389354 1815 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
CCDC88AQ3V6T2 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC17.03■□□□□ 0.32
CCDC88AQ3V6T2 VIPAS39-208ENST00000556412 1832 ntTSL 2 BASIC17.03■□□□□ 0.32
CCDC88AQ3V6T2 PGD-201ENST00000270776 1885 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC88AQ3V6T2 CLUAP1-201ENST00000341633 1643 ntTSL 5 BASIC17.03■□□□□ 0.32
CCDC88AQ3V6T2 SULT1A1-203ENST00000395607 1386 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
CCDC88AQ3V6T2 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CCDC88AQ3V6T2 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CCDC88AQ3V6T2 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
CCDC88AQ3V6T2 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
CCDC88AQ3V6T2 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC17.02■□□□□ 0.32
CCDC88AQ3V6T2 ALG3-205ENST00000445626 1533 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
CCDC88AQ3V6T2 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC17.02■□□□□ 0.32
CCDC88AQ3V6T2 ADK-205ENST00000539909 1866 ntTSL 2 BASIC17.02■□□□□ 0.32
CCDC88AQ3V6T2 CPSF4L-202ENST00000397671 1275 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
CCDC88AQ3V6T2 AL158207.2-201ENST00000414926 266 ntTSL 5 BASIC17.02■□□□□ 0.32
CCDC88AQ3V6T2 AC006328.1-201ENST00000437571 379 ntBASIC17.02■□□□□ 0.32
CCDC88AQ3V6T2 RNU1-80P-201ENST00000459500 161 ntBASIC17.02■□□□□ 0.32
CCDC88AQ3V6T2 SOX2-OT-209ENST00000485035 561 ntTSL 4 BASIC17.02■□□□□ 0.32
CCDC88AQ3V6T2 BAK1P2-201ENST00000532665 631 ntBASIC17.02■□□□□ 0.32
CCDC88AQ3V6T2 AP001094.3-201ENST00000580491 616 ntTSL 2 BASIC17.02■□□□□ 0.32
CCDC88AQ3V6T2 MIR4265-201ENST00000582152 99 ntBASIC17.02■□□□□ 0.32
CCDC88AQ3V6T2 SOX2-OT-222ENST00000595084 853 ntTSL 5 BASIC17.02■□□□□ 0.32
CCDC88AQ3V6T2 SOX2-OT-232ENST00000600386 792 ntTSL 5 BASIC17.02■□□□□ 0.32
CCDC88AQ3V6T2 AL049840.2-201ENST00000602722 535 ntBASIC17.02■□□□□ 0.32
CCDC88AQ3V6T2 AC005609.5-201ENST00000624712 1053 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
CCDC88AQ3V6T2 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CCDC88AQ3V6T2 FGF21-202ENST00000593756 1312 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CCDC88AQ3V6T2 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.31
CCDC88AQ3V6T2 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CCDC88AQ3V6T2 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CCDC88AQ3V6T2 ATL2-210ENST00000452935 2199 ntTSL 2 BASIC17.02■□□□□ 0.31
CCDC88AQ3V6T2 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.31
CCDC88AQ3V6T2 PLEKHB2-206ENST00000409612 2210 ntAPPRIS ALT1 TSL 2 BASIC17.02■□□□□ 0.31
CCDC88AQ3V6T2 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CCDC88AQ3V6T2 TMEM45A-202ENST00000403410 1910 ntTSL 5 BASIC17.02■□□□□ 0.31
CCDC88AQ3V6T2 AC106881.1-201ENST00000605849 3329 ntBASIC17.01■□□□□ 0.31
CCDC88AQ3V6T2 GPM6B-202ENST00000355135 1673 ntAPPRIS ALT1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC88AQ3V6T2 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC88AQ3V6T2 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC88AQ3V6T2 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC88AQ3V6T2 EXOSC7-201ENST00000265564 1055 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCDC88AQ3V6T2 AHCYP3-201ENST00000420053 1279 ntBASIC17.01■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 42.6 ms