Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 ITPR2-202ENST00000381340 11405 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
CLRN1P58418 SDR42E2-201ENST00000602312 2630 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
CLRN1P58418 GRM1-204ENST00000492807 6836 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
CLRN1P58418 BEAN1-201ENST00000299694 2160 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
CLRN1P58418 TRIM46-202ENST00000368382 3127 ntTSL 2 BASIC12.83□□□□□ -0.36
CLRN1P58418 GTF3C2-214ENST00000622534 1858 ntTSL 5 BASIC12.83□□□□□ -0.36
CLRN1P58418 C2orf68-201ENST00000306336 2837 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
CLRN1P58418 FAM171B-201ENST00000304698 5826 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
CLRN1P58418 HDAC9-208ENST00000417496 2524 ntTSL 2 BASIC12.83□□□□□ -0.36
CLRN1P58418 CCNG1-202ENST00000393929 2366 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
CLRN1P58418 SPTBN2-204ENST00000529997 8085 ntTSL 5 BASIC12.83□□□□□ -0.36
CLRN1P58418 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
CLRN1P58418 BAG2-201ENST00000370693 6651 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
CLRN1P58418 PDE8A-201ENST00000310298 3984 ntAPPRIS P4 TSL 1 (best) BASIC12.83□□□□□ -0.36
CLRN1P58418 LINC02486-201ENST00000604157 3000 ntBASIC12.83□□□□□ -0.36
CLRN1P58418 MAP4-204ENST00000395734 5590 ntAPPRIS ALT2 TSL 2 BASIC12.83□□□□□ -0.36
CLRN1P58418 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
CLRN1P58418 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
CLRN1P58418 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
CLRN1P58418 MYMK-201ENST00000339996 818 ntAPPRIS P1 TSL 2 BASIC12.83□□□□□ -0.36
CLRN1P58418 PUS10-202ENST00000398658 1227 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
CLRN1P58418 KLK4-202ENST00000431178 481 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
CLRN1P58418 HSPB1P2-201ENST00000448722 546 ntBASIC12.83□□□□□ -0.36
CLRN1P58418 BNIP3P42-201ENST00000454982 569 ntBASIC12.83□□□□□ -0.36
CLRN1P58418 AC006122.1-201ENST00000493323 440 ntBASIC12.83□□□□□ -0.36
CLRN1P58418 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC12.83□□□□□ -0.36
CLRN1P58418 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
CLRN1P58418 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC12.83□□□□□ -0.36
CLRN1P58418 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC12.83□□□□□ -0.36
CLRN1P58418 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC12.83□□□□□ -0.36
CLRN1P58418 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC12.83□□□□□ -0.36
CLRN1P58418 NPLOC4-209ENST00000572760 946 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
CLRN1P58418 MIR4259-201ENST00000584466 101 ntBASIC12.83□□□□□ -0.36
CLRN1P58418 AC008805.1-201ENST00000590892 364 ntBASIC12.83□□□□□ -0.36
CLRN1P58418 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC12.83□□□□□ -0.36
CLRN1P58418 BNIP3P29-201ENST00000598302 571 ntBASIC12.83□□□□□ -0.36
CLRN1P58418 KLK11-210ENST00000600362 759 ntTSL 3 BASIC12.83□□□□□ -0.36
CLRN1P58418 MUC1-226ENST00000614519 1093 ntTSL 2 BASIC12.83□□□□□ -0.36
CLRN1P58418 AC011447.5-201ENST00000616168 564 ntBASIC12.83□□□□□ -0.36
CLRN1P58418 AL591471.1-201ENST00000621855 229 ntBASIC12.83□□□□□ -0.36
CLRN1P58418 MKL1-203ENST00000402042 4343 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
CLRN1P58418 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC12.83□□□□□ -0.36
CLRN1P58418 ABAT-203ENST00000425191 1923 ntAPPRIS P1 TSL 2 BASIC12.83□□□□□ -0.36
CLRN1P58418 SLC25A21-AS1-201ENST00000556667 1924 ntBASIC12.83□□□□□ -0.36
CLRN1P58418 NBAT1-201ENST00000566912 1940 ntTSL 2 BASIC12.83□□□□□ -0.36
CLRN1P58418 WDR77-201ENST00000235090 2576 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
CLRN1P58418 GFRA1-201ENST00000355422 2583 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
CLRN1P58418 KIFC3-204ENST00000465878 3225 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
CLRN1P58418 CLN8-204ENST00000519254 1769 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
CLRN1P58418 COLEC11-203ENST00000382062 1633 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
CLRN1P58418 NOP14-AS1-201ENST00000503709 1616 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
CLRN1P58418 LMBRD2-201ENST00000296603 8185 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
CLRN1P58418 NEK4-201ENST00000233027 6057 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
CLRN1P58418 DLK1-201ENST00000331224 1324 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
CLRN1P58418 AC104129.1-202ENST00000480694 4481 ntTSL 2 BASIC12.83□□□□□ -0.36
CLRN1P58418 CRCP-203ENST00000395326 3009 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
CLRN1P58418 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
CLRN1P58418 ZSCAN5A-206ENST00000587492 1542 ntTSL 2 BASIC12.83□□□□□ -0.36
CLRN1P58418 ECE1-201ENST00000264205 2381 ntAPPRIS P4 TSL 1 (best) BASIC12.83□□□□□ -0.36
CLRN1P58418 LOXL3-202ENST00000393937 2398 ntTSL 5 BASIC12.83□□□□□ -0.36
CLRN1P58418 DNER-201ENST00000341772 3260 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CLRN1P58418 PRC1-204ENST00000442656 2060 ntTSL 2 BASIC12.82□□□□□ -0.36
CLRN1P58418 GIPC2-201ENST00000370759 3847 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CLRN1P58418 RTFDC1-203ENST00000395881 1572 ntTSL 2 BASIC12.82□□□□□ -0.36
CLRN1P58418 SLC6A12-207ENST00000536824 2101 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CLRN1P58418 RAD17-207ENST00000361732 3002 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
CLRN1P58418 MRGPRX4-201ENST00000314254 1444 ntAPPRIS P1 BASIC12.82□□□□□ -0.36
CLRN1P58418 GSTM4-204ENST00000369836 1412 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
CLRN1P58418 CCDC197-206ENST00000640978 1429 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
CLRN1P58418 C1R-202ENST00000536053 2347 ntTSL 2 BASIC12.82□□□□□ -0.36
CLRN1P58418 SEMA3F-202ENST00000413852 3212 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
CLRN1P58418 DIRAS3-201ENST00000370981 1973 ntAPPRIS P1 TSL 2 BASIC12.82□□□□□ -0.36
CLRN1P58418 CNP-202ENST00000393892 5217 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CLRN1P58418 HEBP1-201ENST00000014930 1173 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CLRN1P58418 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
CLRN1P58418 C19orf18-201ENST00000314391 915 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CLRN1P58418 KRTAP19-5-201ENST00000334151 461 ntAPPRIS P1 BASIC12.82□□□□□ -0.36
CLRN1P58418 COX8C-201ENST00000342144 533 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CLRN1P58418 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC12.82□□□□□ -0.36
CLRN1P58418 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
CLRN1P58418 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC12.82□□□□□ -0.36
CLRN1P58418 AL009181.1-201ENST00000418471 1085 ntTSL 5 BASIC12.82□□□□□ -0.36
CLRN1P58418 AP000696.1-201ENST00000457669 1133 ntTSL 3 BASIC12.82□□□□□ -0.36
CLRN1P58418 RPSAP36-202ENST00000494591 1261 ntBASIC12.82□□□□□ -0.36
CLRN1P58418 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
CLRN1P58418 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC12.82□□□□□ -0.36
CLRN1P58418 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC12.82□□□□□ -0.36
CLRN1P58418 RIT1-205ENST00000539040 919 ntTSL 2 BASIC12.82□□□□□ -0.36
CLRN1P58418 NAA40-206ENST00000542163 1035 ntTSL 2 BASIC12.82□□□□□ -0.36
CLRN1P58418 AL160314.3-201ENST00000556041 767 ntBASIC12.82□□□□□ -0.36
CLRN1P58418 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CLRN1P58418 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC12.82□□□□□ -0.36
CLRN1P58418 AP002360.2-202ENST00000572035 738 ntTSL 3 BASIC12.82□□□□□ -0.36
CLRN1P58418 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC12.82□□□□□ -0.36
CLRN1P58418 AL023803.2-201ENST00000620080 638 ntBASIC12.82□□□□□ -0.36
CLRN1P58418 AC009975.2-202ENST00000634539 854 ntTSL 5 BASIC12.82□□□□□ -0.36
CLRN1P58418 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC12.82□□□□□ -0.36
CLRN1P58418 FAM163A-201ENST00000341785 2909 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CLRN1P58418 RRAGD-201ENST00000359203 4042 ntTSL 2 BASIC12.82□□□□□ -0.36
CLRN1P58418 CREB3L4-202ENST00000368600 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 60.5 ms