Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 ARHGEF9-230ENST00000637178 2145 ntTSL 5 BASIC10.99□□□□□ -0.65
HLA-DMBP28068 UBE2D3-210ENST00000453744 3990 ntAPPRIS ALT1 TSL 1 (best) BASIC10.99□□□□□ -0.65
HLA-DMBP28068 IL20RA-207ENST00000541547 3382 ntTSL 2 BASIC10.99□□□□□ -0.65
HLA-DMBP28068 REV1-202ENST00000393445 4686 ntAPPRIS ALT1 TSL 1 (best) BASIC10.99□□□□□ -0.65
HLA-DMBP28068 GNAO1-214ENST00000638705 3529 ntAPPRIS P5 TSL 1 (best) BASIC10.98□□□□□ -0.65
HLA-DMBP28068 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC10.98□□□□□ -0.65
HLA-DMBP28068 ANKRD30BP2-201ENST00000435744 1610 ntBASIC10.98□□□□□ -0.65
HLA-DMBP28068 CFAP43-201ENST00000278064 2963 ntTSL 1 (best) BASIC10.98□□□□□ -0.65
HLA-DMBP28068 ATG3-202ENST00000402314 3010 ntTSL 1 (best) BASIC10.98□□□□□ -0.65
HLA-DMBP28068 HMOX2-216ENST00000613539 1703 ntTSL 5 BASIC10.98□□□□□ -0.65
HLA-DMBP28068 EGFR-207ENST00000455089 3844 ntTSL 1 (best) BASIC10.98□□□□□ -0.65
HLA-DMBP28068 NLRP2B-201ENST00000434992 3194 ntAPPRIS P1 BASIC10.98□□□□□ -0.65
HLA-DMBP28068 PPT2-245ENST00000361568 1759 ntAPPRIS P4 TSL 1 (best) BASIC10.98□□□□□ -0.65
HLA-DMBP28068 SLC16A1-201ENST00000369626 3910 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
HLA-DMBP28068 GALC-206ENST00000544807 2528 ntTSL 2 BASIC10.98□□□□□ -0.65
HLA-DMBP28068 AL928654.5-201ENST00000624831 2501 ntBASIC10.98□□□□□ -0.65
HLA-DMBP28068 AC073548.1-201ENST00000624088 1882 ntBASIC10.98□□□□□ -0.65
HLA-DMBP28068 NCBP2-204ENST00000427641 1946 ntTSL 2 BASIC10.98□□□□□ -0.65
HLA-DMBP28068 CR382287.2-201ENST00000623370 1942 ntTSL 2 BASIC10.98□□□□□ -0.65
HLA-DMBP28068 ATP2B2-210ENST00000638646 3465 ntTSL 5 BASIC10.98□□□□□ -0.65
HLA-DMBP28068 FAM122B-201ENST00000298090 2706 ntAPPRIS ALT2 TSL 2 BASIC10.98□□□□□ -0.65
HLA-DMBP28068 HIPK1-205ENST00000369558 8157 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
HLA-DMBP28068 HOXA3-201ENST00000317201 2761 ntAPPRIS P1 TSL 5 BASIC10.98□□□□□ -0.65
HLA-DMBP28068 B3GNT4-202ENST00000535274 2938 ntAPPRIS P1 BASIC10.98□□□□□ -0.65
HLA-DMBP28068 AC019294.4-201ENST00000561777 2905 ntBASIC10.98□□□□□ -0.65
HLA-DMBP28068 EPB41L1-202ENST00000338074 6266 ntAPPRIS P3 TSL 1 (best) BASIC10.98□□□□□ -0.65
HLA-DMBP28068 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC10.98□□□□□ -0.65
HLA-DMBP28068 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
HLA-DMBP28068 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC10.98□□□□□ -0.65
HLA-DMBP28068 C2orf27AP3-201ENST00000434123 579 ntBASIC10.98□□□□□ -0.65
HLA-DMBP28068 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC10.98□□□□□ -0.65
HLA-DMBP28068 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC10.98□□□□□ -0.65
HLA-DMBP28068 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC10.98□□□□□ -0.65
HLA-DMBP28068 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC10.98□□□□□ -0.65
HLA-DMBP28068 RNA5SP486-201ENST00000515961 83 ntBASIC10.98□□□□□ -0.65
HLA-DMBP28068 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC10.98□□□□□ -0.65
HLA-DMBP28068 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC10.98□□□□□ -0.65
HLA-DMBP28068 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC10.98□□□□□ -0.65
HLA-DMBP28068 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC10.98□□□□□ -0.65
HLA-DMBP28068 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC10.98□□□□□ -0.65
HLA-DMBP28068 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC10.98□□□□□ -0.65
HLA-DMBP28068 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC10.98□□□□□ -0.65
HLA-DMBP28068 AC078819.1-201ENST00000547454 765 ntBASIC10.98□□□□□ -0.65
HLA-DMBP28068 AC012085.1-201ENST00000548270 765 ntBASIC10.98□□□□□ -0.65
HLA-DMBP28068 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC10.98□□□□□ -0.65
HLA-DMBP28068 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC10.98□□□□□ -0.65
HLA-DMBP28068 AC005586.2-201ENST00000563946 837 ntBASIC10.98□□□□□ -0.65
HLA-DMBP28068 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC10.98□□□□□ -0.65
HLA-DMBP28068 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC10.98□□□□□ -0.65
HLA-DMBP28068 MIR4259-201ENST00000584466 101 ntBASIC10.98□□□□□ -0.65
HLA-DMBP28068 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC10.98□□□□□ -0.65
HLA-DMBP28068 AC073413.1-201ENST00000603927 732 ntBASIC10.98□□□□□ -0.65
HLA-DMBP28068 AL354718.3-201ENST00000616414 581 ntBASIC10.98□□□□□ -0.65
HLA-DMBP28068 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC10.98□□□□□ -0.65
HLA-DMBP28068 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC10.98□□□□□ -0.65
HLA-DMBP28068 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC10.98□□□□□ -0.65
HLA-DMBP28068 CR382287.1-201ENST00000623954 586 ntBASIC10.98□□□□□ -0.65
HLA-DMBP28068 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC10.98□□□□□ -0.65
HLA-DMBP28068 SLC9B2-202ENST00000394785 3126 ntAPPRIS P1 TSL 2 BASIC10.98□□□□□ -0.65
HLA-DMBP28068 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
HLA-DMBP28068 MTCL1-202ENST00000359865 6093 ntAPPRIS P2 TSL 2 BASIC10.98□□□□□ -0.65
HLA-DMBP28068 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
HLA-DMBP28068 RGS8-204ENST00000483095 1432 ntAPPRIS P1 TSL 2 BASIC10.98□□□□□ -0.65
HLA-DMBP28068 CFAP74-209ENST00000493964 5247 ntAPPRIS P5 TSL 5 BASIC10.98□□□□□ -0.65
HLA-DMBP28068 LHX1-201ENST00000614239 3425 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
HLA-DMBP28068 AL354989.2-201ENST00000435838 1540 ntBASIC10.98□□□□□ -0.65
HLA-DMBP28068 SLC22A12-202ENST00000377567 2599 ntTSL 5 BASIC10.98□□□□□ -0.65
HLA-DMBP28068 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
HLA-DMBP28068 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC10.98□□□□□ -0.65
HLA-DMBP28068 IL12RB1-203ENST00000593993 2782 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
HLA-DMBP28068 NCLN-201ENST00000246117 4005 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
HLA-DMBP28068 CCDC57-203ENST00000392343 2896 ntAPPRIS P2 TSL 1 (best) BASIC10.98□□□□□ -0.65
HLA-DMBP28068 APOF-201ENST00000398189 1715 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
HLA-DMBP28068 LINC01671-201ENST00000419628 1775 ntTSL 1 (best) BASIC10.98□□□□□ -0.65
HLA-DMBP28068 LRIF1-202ENST00000485275 1796 ntAPPRIS ALT2 TSL 2 BASIC10.98□□□□□ -0.65
HLA-DMBP28068 ZNF829-201ENST00000391711 1805 ntAPPRIS P3 TSL 1 (best) BASIC10.98□□□□□ -0.65
HLA-DMBP28068 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC10.98□□□□□ -0.65
HLA-DMBP28068 PTK2-202ENST00000395218 4415 ntTSL 5 BASIC10.98□□□□□ -0.65
HLA-DMBP28068 LRCH3-206ENST00000438796 7394 ntAPPRIS P5 TSL 2 BASIC10.97□□□□□ -0.65
HLA-DMBP28068 ALCAM-201ENST00000306107 4701 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
HLA-DMBP28068 ARMCX3-203ENST00000471229 2051 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
HLA-DMBP28068 POM121-205ENST00000627934 5480 ntAPPRIS P3 TSL 5 BASIC10.97□□□□□ -0.65
HLA-DMBP28068 DGCR9-201ENST00000609630 2415 ntBASIC10.97□□□□□ -0.65
HLA-DMBP28068 CCNC-210ENST00000520429 2473 ntAPPRIS P2 TSL 1 (best) BASIC10.97□□□□□ -0.65
HLA-DMBP28068 WASHC2C-210ENST00000623400 4616 ntAPPRIS ALT2 TSL 1 (best) BASIC10.97□□□□□ -0.65
HLA-DMBP28068 C11orf21-201ENST00000381153 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC10.97□□□□□ -0.65
HLA-DMBP28068 ALDH7A1-201ENST00000409134 4964 ntAPPRIS P2 TSL 1 (best) BASIC10.97□□□□□ -0.65
HLA-DMBP28068 TMEM123-201ENST00000361236 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC10.97□□□□□ -0.65
HLA-DMBP28068 USP40-208ENST00000450966 5616 ntAPPRIS P2 TSL 1 (best) BASIC10.97□□□□□ -0.65
HLA-DMBP28068 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
HLA-DMBP28068 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC10.97□□□□□ -0.65
HLA-DMBP28068 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC10.97□□□□□ -0.65
HLA-DMBP28068 AC092933.1-201ENST00000393644 945 ntBASIC10.97□□□□□ -0.65
HLA-DMBP28068 STX1A-203ENST00000395155 783 ntTSL 2 BASIC10.97□□□□□ -0.65
HLA-DMBP28068 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC10.97□□□□□ -0.65
HLA-DMBP28068 CD8B2-202ENST00000417670 633 ntBASIC10.97□□□□□ -0.65
HLA-DMBP28068 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC10.97□□□□□ -0.65
HLA-DMBP28068 AC016694.1-201ENST00000434179 700 ntBASIC10.97□□□□□ -0.65
HLA-DMBP28068 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC10.97□□□□□ -0.65
HLA-DMBP28068 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC10.97□□□□□ -0.65
Retrieved 100 of 98,524 protein–RNA pairs in 46.8 ms