Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 SF3B1-204ENST00000414963 651 ntTSL 1 (best) BASIC15.05■□□□□ -0
BDNFP23560 RHBDD2-203ENST00000428119 1274 ntTSL 1 (best) BASIC15.05■□□□□ -0
BDNFP23560 AL139420.2-201ENST00000449439 410 ntTSL 3 BASIC15.05■□□□□ -0
BDNFP23560 NDUFS6P1-201ENST00000485187 316 ntBASIC15.05■□□□□ -0
BDNFP23560 ALG1L13P-204ENST00000523017 765 ntTSL 5 BASIC15.05■□□□□ -0
BDNFP23560 C12orf73-211ENST00000553183 660 ntAPPRIS P1 TSL 3 BASIC15.05■□□□□ -0
BDNFP23560 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC15.05■□□□□ -0
BDNFP23560 AC107871.2-202ENST00000563057 396 ntTSL 2 BASIC15.05■□□□□ -0
BDNFP23560 FAM104A-206ENST00000583024 417 ntTSL 3 BASIC15.05■□□□□ -0
BDNFP23560 TMEM205-210ENST00000588560 840 ntAPPRIS P1 TSL 2 BASIC15.05■□□□□ -0
BDNFP23560 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC15.05■□□□□ -0
BDNFP23560 GHRHR-212ENST00000611037 923 ntTSL 5 BASIC15.05■□□□□ -0
BDNFP23560 TUBB8P4-201ENST00000511806 1324 ntBASIC15.05■□□□□ -0
BDNFP23560 BFAR-203ENST00000562442 1414 ntTSL 2 BASIC15.05■□□□□ -0
BDNFP23560 BTNL8-211ENST00000610640 1488 ntTSL 5 BASIC15.05■□□□□ -0
BDNFP23560 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
BDNFP23560 FAM96A-203ENST00000557835 1536 ntTSL 2 BASIC15.05■□□□□ -0
BDNFP23560 ACVR1C-204ENST00000409680 1786 ntTSL 1 (best) BASIC15.05■□□□□ -0
BDNFP23560 GPR84-202ENST00000551809 2041 ntAPPRIS P1 BASIC15.05■□□□□ -0
BDNFP23560 NAXD-201ENST00000309957 2659 ntAPPRIS P1 TSL 2 BASIC15.05■□□□□ -0
BDNFP23560 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
BDNFP23560 LINC02486-201ENST00000604157 3000 ntBASIC15.05■□□□□ -0
BDNFP23560 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC15.05■□□□□ -0
BDNFP23560 FUK-202ENST00000378912 3925 ntTSL 2 BASIC15.05■□□□□ -0
BDNFP23560 ARRDC4-201ENST00000268042 4072 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
BDNFP23560 NBPF26-208ENST00000620612 4602 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ -0
BDNFP23560 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
BDNFP23560 KIF17-203ENST00000400463 3731 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
BDNFP23560 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC15.04■□□□□ -0
BDNFP23560 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC15.04■□□□□ -0
BDNFP23560 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
BDNFP23560 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC15.04■□□□□ -0
BDNFP23560 OTULIN-201ENST00000284274 7800 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
BDNFP23560 ZNF100-201ENST00000305570 2283 ntTSL 1 (best) BASIC15.04■□□□□ -0
BDNFP23560 UNQ6494-202ENST00000617436 2163 ntTSL 2 BASIC15.04■□□□□ -0
BDNFP23560 MOV10L1-202ENST00000354853 1701 ntTSL 2 BASIC15.04■□□□□ -0
BDNFP23560 SPAG8-209ENST00000484764 1618 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
BDNFP23560 CYB5D2-203ENST00000575251 1588 ntTSL 2 BASIC15.04■□□□□ -0
BDNFP23560 HLA-DQB1-202ENST00000399079 1501 ntBASIC15.04■□□□□ -0
BDNFP23560 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC15.04■□□□□ -0
BDNFP23560 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
BDNFP23560 AC006480.2-201ENST00000609770 1337 ntBASIC15.04■□□□□ -0
BDNFP23560 AC011287.1-201ENST00000639998 1349 ntTSL 5 BASIC15.04■□□□□ -0
BDNFP23560 B9D1-202ENST00000268841 755 ntTSL 1 (best) BASIC15.04■□□□□ -0
BDNFP23560 PDE6G-201ENST00000331056 1029 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
BDNFP23560 DEFB123-201ENST00000376309 467 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
BDNFP23560 AP000356.3-201ENST00000382243 753 ntBASIC15.04■□□□□ -0
BDNFP23560 MIR645-201ENST00000385283 94 ntBASIC15.04■□□□□ -0
BDNFP23560 BAX-205ENST00000391871 687 ntTSL 5 BASIC15.04■□□□□ -0
BDNFP23560 PHACTR2-204ENST00000397980 745 ntTSL 3 BASIC15.04■□□□□ -0
BDNFP23560 MPV17-204ENST00000399052 749 ntTSL 4 BASIC15.04■□□□□ -0
BDNFP23560 ZNF226-203ENST00000413984 716 ntTSL 3 BASIC15.04■□□□□ -0
BDNFP23560 KLHDC8A-203ENST00000460687 1022 ntTSL 5 BASIC15.04■□□□□ -0
BDNFP23560 AC133961.1-201ENST00000503085 762 ntTSL 3 BASIC15.04■□□□□ -0
BDNFP23560 IFITM3-202ENST00000526811 543 ntAPPRIS ALT1 TSL 5 BASIC15.04■□□□□ -0
BDNFP23560 TMEM14C-205ENST00000541412 1177 ntAPPRIS P1 TSL 2 BASIC15.04■□□□□ -0
BDNFP23560 COG4-212ENST00000564653 590 ntTSL 5 BASIC15.04■□□□□ -0
BDNFP23560 TMEM231-206ENST00000565067 1078 ntTSL 5 BASIC15.04■□□□□ -0
BDNFP23560 AC099684.2-201ENST00000574520 870 ntTSL 5 BASIC15.04■□□□□ -0
BDNFP23560 AC008743.1-201ENST00000596350 813 ntTSL 4 BASIC15.04■□□□□ -0
BDNFP23560 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
BDNFP23560 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
BDNFP23560 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
BDNFP23560 BAIAP3-202ENST00000397488 4583 ntTSL 1 (best) BASIC15.04■□□□□ -0
BDNFP23560 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC15.04■□□□□ -0
BDNFP23560 POU6F1-208ENST00000550824 2664 ntTSL 5 BASIC15.04■□□□□ -0
BDNFP23560 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC15.04■□□□□ -0
BDNFP23560 HARS2-201ENST00000230771 2483 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
BDNFP23560 CHIT1-202ENST00000367229 2246 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
BDNFP23560 KCP-203ENST00000610776 5108 ntTSL 5 BASIC15.04■□□□□ -0
BDNFP23560 ATL2-210ENST00000452935 2199 ntTSL 2 BASIC15.04■□□□□ -0
BDNFP23560 MPP2-214ENST00000523501 2121 ntAPPRIS P1 TSL 2 BASIC15.04■□□□□ -0
BDNFP23560 CASC2-202ENST00000426021 3232 ntTSL 1 (best) BASIC15.04■□□□□ -0
BDNFP23560 AL591122.2-201ENST00000624125 1853 ntBASIC15.03■□□□□ -0
BDNFP23560 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC15.03■□□□□ -0
BDNFP23560 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
BDNFP23560 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
BDNFP23560 TBC1D24-205ENST00000567020 6673 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
BDNFP23560 NUDT16-202ENST00000521288 6108 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
BDNFP23560 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
BDNFP23560 CDK3-201ENST00000425876 1582 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
BDNFP23560 CDK3-202ENST00000448471 1570 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
BDNFP23560 LHFPL2-207ENST00000515007 4680 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
BDNFP23560 TJP3-202ENST00000541714 3350 ntAPPRIS P3 TSL 2 BASIC15.03■□□□□ -0
BDNFP23560 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC15.03■□□□□ -0
BDNFP23560 TGOLN2-204ENST00000409015 2276 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
BDNFP23560 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
BDNFP23560 HIGD1A-202ENST00000418900 1322 ntAPPRIS P1 TSL 2 BASIC15.03■□□□□ -0
BDNFP23560 C19orf18-201ENST00000314391 915 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
BDNFP23560 LYPLA2-202ENST00000374502 1072 ntTSL 2 BASIC15.03■□□□□ -0
BDNFP23560 AL512430.1-201ENST00000392575 860 ntBASIC15.03■□□□□ -0
BDNFP23560 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
BDNFP23560 PCBP3-201ENST00000400304 1086 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
BDNFP23560 MFAP3-202ENST00000439768 1186 ntTSL 2 BASIC15.03■□□□□ -0
BDNFP23560 UBXN7-AS1-201ENST00000442941 386 ntTSL 3 BASIC15.03■□□□□ -0
BDNFP23560 AL606489.1-201ENST00000443515 486 ntTSL 3 BASIC15.03■□□□□ -0
BDNFP23560 PCBP3-208ENST00000449640 1278 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -0
BDNFP23560 AC025165.3-201ENST00000471530 679 ntTSL 5 BASIC15.03■□□□□ -0
BDNFP23560 TMEM198B-204ENST00000484016 896 ntBASIC15.03■□□□□ -0
BDNFP23560 NACA-221ENST00000552540 1074 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Retrieved 100 of 98,524 protein–RNA pairs in 49.9 ms