Protein–RNA interactions for Protein: P19447

ERCC3, TFIIH basal transcription factor complex helicase XPB subunit, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3P19447 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
ERCC3P19447 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
ERCC3P19447 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC16.6■□□□□ 0.25
ERCC3P19447 APOA1-202ENST00000359492 932 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
ERCC3P19447 CD300A-204ENST00000392625 1163 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
ERCC3P19447 MPC1L-201ENST00000423387 571 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
ERCC3P19447 AL157788.1-201ENST00000437838 229 ntTSL 3 BASIC16.6■□□□□ 0.25
ERCC3P19447 AL356056.1-201ENST00000437899 369 ntTSL 5 BASIC16.6■□□□□ 0.25
ERCC3P19447 BX276092.5-201ENST00000439926 886 ntTSL 5 BASIC16.6■□□□□ 0.25
ERCC3P19447 AC004869.1-201ENST00000440935 540 ntTSL 4 BASIC16.6■□□□□ 0.25
ERCC3P19447 AC018463.1-201ENST00000456674 917 ntBASIC16.6■□□□□ 0.25
ERCC3P19447 AL512330.1-201ENST00000456701 349 ntTSL 3 BASIC16.6■□□□□ 0.25
ERCC3P19447 BUD31-205ENST00000456893 512 ntTSL 5 BASIC16.6■□□□□ 0.25
ERCC3P19447 IGHV3-37-201ENST00000518544 340 ntBASIC16.6■□□□□ 0.25
ERCC3P19447 AC129102.1-201ENST00000535755 525 ntTSL 4 BASIC16.6■□□□□ 0.25
ERCC3P19447 AC025154.2-202ENST00000552379 592 ntTSL 3 BASIC16.6■□□□□ 0.25
ERCC3P19447 DRG2-220ENST00000583355 891 ntTSL 3 BASIC16.6■□□□□ 0.25
ERCC3P19447 TMEM205-210ENST00000588560 840 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
ERCC3P19447 AC107464.3-201ENST00000609172 737 ntBASIC16.6■□□□□ 0.25
ERCC3P19447 AC005618.3-201ENST00000624928 458 ntBASIC16.6■□□□□ 0.25
ERCC3P19447 TAGLN3-201ENST00000273368 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
ERCC3P19447 SERHL-201ENST00000359906 1346 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
ERCC3P19447 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
ERCC3P19447 PSG4-203ENST00000433626 1887 ntTSL 2 BASIC16.6■□□□□ 0.25
ERCC3P19447 SPECC1-202ENST00000395522 2982 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
ERCC3P19447 MIR22HG-201ENST00000334146 1383 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
ERCC3P19447 ELP5-203ENST00000396627 1389 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
ERCC3P19447 NDUFC2-201ENST00000281031 2518 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
ERCC3P19447 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
ERCC3P19447 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC16.6■□□□□ 0.25
ERCC3P19447 SYNGAP1-203ENST00000428982 4339 ntTSL 5 BASIC16.6■□□□□ 0.25
ERCC3P19447 ZNF133-203ENST00000377671 2701 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
ERCC3P19447 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
ERCC3P19447 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
ERCC3P19447 SLC25A20-202ENST00000430379 1576 ntTSL 3 BASIC16.6■□□□□ 0.25
ERCC3P19447 RIMS1-214ENST00000518273 4116 ntTSL 5 BASIC16.6■□□□□ 0.25
ERCC3P19447 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC16.59■□□□□ 0.25
ERCC3P19447 AC025271.4-201ENST00000621477 1726 ntBASIC16.59■□□□□ 0.25
ERCC3P19447 MEGF11-204ENST00000422354 5914 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
ERCC3P19447 AGBL3-202ENST00000435976 2495 ntTSL 5 BASIC16.59■□□□□ 0.25
ERCC3P19447 PPP1R12A-AS1-201ENST00000552885 3234 ntTSL 3 BASIC16.59■□□□□ 0.25
ERCC3P19447 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
ERCC3P19447 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
ERCC3P19447 RAF1-201ENST00000251849 3300 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
ERCC3P19447 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
ERCC3P19447 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC16.59■□□□□ 0.25
ERCC3P19447 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
ERCC3P19447 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
ERCC3P19447 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
ERCC3P19447 TACR2-201ENST00000373306 2083 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
ERCC3P19447 CNR1-201ENST00000362094 1252 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
ERCC3P19447 SMIM29-202ENST00000394990 792 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
ERCC3P19447 PHACTR2-204ENST00000397980 745 ntTSL 3 BASIC16.59■□□□□ 0.25
ERCC3P19447 AC012362.1-201ENST00000434906 739 ntBASIC16.59■□□□□ 0.25
ERCC3P19447 UPK1A-AS1-201ENST00000443196 795 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
ERCC3P19447 TMCO5B-205ENST00000530020 894 ntBASIC16.59■□□□□ 0.25
ERCC3P19447 AC006435.2-201ENST00000574290 846 ntTSL 5 BASIC16.59■□□□□ 0.25
ERCC3P19447 LINC01224-201ENST00000593573 798 ntTSL 4 BASIC16.59■□□□□ 0.25
ERCC3P19447 ST6GAL2-204ENST00000409382 7275 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
ERCC3P19447 ARHGAP36-201ENST00000276211 3083 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
ERCC3P19447 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
ERCC3P19447 SERPINB9P1-202ENST00000545177 1375 ntTSL 3 BASIC16.59■□□□□ 0.25
ERCC3P19447 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
ERCC3P19447 CTSL-201ENST00000340342 1436 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
ERCC3P19447 PCCB-215ENST00000482086 1436 ntTSL 3 BASIC16.59■□□□□ 0.25
ERCC3P19447 MEIKIN-205ENST00000616644 1438 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
ERCC3P19447 GCM2-201ENST00000379491 2441 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
ERCC3P19447 ZBED1-203ENST00000381223 4510 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
ERCC3P19447 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC16.59■□□□□ 0.25
ERCC3P19447 PSMD9-207ENST00000541212 2784 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
ERCC3P19447 LINC00963-203ENST00000423918 1654 ntTSL 2 BASIC16.59■□□□□ 0.25
ERCC3P19447 KCNH4-201ENST00000264661 3920 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
ERCC3P19447 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
ERCC3P19447 TLL1-201ENST00000061240 6708 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
ERCC3P19447 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
ERCC3P19447 SOX21-AS1-201ENST00000438290 3287 ntTSL 2 BASIC16.58■□□□□ 0.25
ERCC3P19447 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
ERCC3P19447 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
ERCC3P19447 DNAJC14-203ENST00000357606 3416 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.25
ERCC3P19447 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
ERCC3P19447 CCDC169-SOHLH2-201ENST00000511166 2051 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.25
ERCC3P19447 AC004706.4-201ENST00000634965 3537 ntAPPRIS P1 BASIC16.58■□□□□ 0.25
ERCC3P19447 CYP1B1-205ENST00000610745 5250 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
ERCC3P19447 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
ERCC3P19447 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC16.58■□□□□ 0.25
ERCC3P19447 EIF4G1-212ENST00000424196 5653 ntTSL 2 BASIC16.58■□□□□ 0.25
ERCC3P19447 TOMM40L-201ENST00000367987 2636 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
ERCC3P19447 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC16.58■□□□□ 0.24
ERCC3P19447 PHTF2-206ENST00000422959 3525 ntAPPRIS P4 TSL 5 BASIC16.58■□□□□ 0.24
ERCC3P19447 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
ERCC3P19447 PLAGL1-201ENST00000354765 3663 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
ERCC3P19447 FERD3L-201ENST00000275461 640 ntAPPRIS P1 BASIC16.58■□□□□ 0.24
ERCC3P19447 JTB-202ENST00000356648 1040 ntTSL 2 BASIC16.58■□□□□ 0.24
ERCC3P19447 TRBJ2-6-201ENST00000390418 53 ntAPPRIS P1 BASIC16.58■□□□□ 0.24
ERCC3P19447 TP53I3-203ENST00000407482 747 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
ERCC3P19447 HIST2H2BA-201ENST00000412169 381 ntBASIC16.58■□□□□ 0.24
ERCC3P19447 AC005392.1-201ENST00000419624 500 ntTSL 5 BASIC16.58■□□□□ 0.24
ERCC3P19447 CCDC18-AS1-219ENST00000451302 1212 ntTSL 3 BASIC16.58■□□□□ 0.24
ERCC3P19447 SMIM6-201ENST00000556126 866 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
ERCC3P19447 KRT8P1-201ENST00000557533 1207 ntBASIC16.58■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms