Protein–RNA interactions for Protein: P12110

COL6A2, Collagen alpha-2(VI) chain, humanhuman

Predictions only

Length 1,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2P12110 HGNC:18790-201ENST00000397958 2650 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
COL6A2P12110 GIPR-205ENST00000590918 3289 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL6A2P12110 AL590824.1-201ENST00000403828 1349 ntBASIC14.17□□□□□ -0.14
COL6A2P12110 TNRC18-203ENST00000399537 10572 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
COL6A2P12110 TNRC18-205ENST00000430969 10562 ntAPPRIS P2 TSL 5 BASIC14.17□□□□□ -0.14
COL6A2P12110 UNC5B-202ENST00000373192 6451 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
COL6A2P12110 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
COL6A2P12110 IGF2-203ENST00000381395 4527 ntAPPRIS P2 TSL 2 BASIC14.17□□□□□ -0.14
COL6A2P12110 C12orf43-202ENST00000445832 2397 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
COL6A2P12110 PLSCR1-214ENST00000487389 1443 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
COL6A2P12110 RGMA-204ENST00000543599 3174 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
COL6A2P12110 ALG3-205ENST00000445626 1533 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
COL6A2P12110 HPGD-209ENST00000510901 1535 ntTSL 2 BASIC14.17□□□□□ -0.14
COL6A2P12110 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
COL6A2P12110 CFLAR-206ENST00000395148 4415 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
COL6A2P12110 SUOX-202ENST00000356124 2306 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL6A2P12110 MRPL17-201ENST00000288937 1969 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL6A2P12110 RIOK3-207ENST00000581585 1966 ntTSL 2 BASIC14.17□□□□□ -0.14
COL6A2P12110 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL6A2P12110 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC14.17□□□□□ -0.14
COL6A2P12110 KRTAP19-5-201ENST00000334151 461 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
COL6A2P12110 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC14.17□□□□□ -0.14
COL6A2P12110 UBE2I-206ENST00000403747 1217 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
COL6A2P12110 AC136604.1-202ENST00000425471 771 ntBASIC14.17□□□□□ -0.14
COL6A2P12110 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC14.17□□□□□ -0.14
COL6A2P12110 FAM58BP-201ENST00000439056 645 ntBASIC14.17□□□□□ -0.14
COL6A2P12110 TTTY23B-201ENST00000442790 549 ntBASIC14.17□□□□□ -0.14
COL6A2P12110 CNN2P10-201ENST00000443067 918 ntBASIC14.17□□□□□ -0.14
COL6A2P12110 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC14.17□□□□□ -0.14
COL6A2P12110 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC14.17□□□□□ -0.14
COL6A2P12110 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
COL6A2P12110 AC022217.1-201ENST00000521069 738 ntBASIC14.17□□□□□ -0.14
COL6A2P12110 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC14.17□□□□□ -0.14
COL6A2P12110 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC14.17□□□□□ -0.14
COL6A2P12110 ARL16-210ENST00000574938 751 ntTSL 2 BASIC14.17□□□□□ -0.14
COL6A2P12110 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC14.17□□□□□ -0.14
COL6A2P12110 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC14.17□□□□□ -0.14
COL6A2P12110 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC14.17□□□□□ -0.14
COL6A2P12110 AL591471.1-201ENST00000621855 229 ntBASIC14.17□□□□□ -0.14
COL6A2P12110 AC004241.5-201ENST00000623870 2448 ntBASIC14.17□□□□□ -0.14
COL6A2P12110 KCNH4-201ENST00000264661 3920 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL6A2P12110 ROPN1B-202ENST00000504401 2050 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
COL6A2P12110 DAGLB-201ENST00000297056 2897 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL6A2P12110 AMIGO3-201ENST00000320431 2862 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
COL6A2P12110 SF1-205ENST00000377394 2854 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
COL6A2P12110 PSAP-202ENST00000394936 2872 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL6A2P12110 CDH16-201ENST00000299752 2954 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL6A2P12110 FAM200B-201ENST00000422728 2962 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL6A2P12110 SLC52A1-203ENST00000512825 2989 ntTSL 2 BASIC14.17□□□□□ -0.14
COL6A2P12110 CCT6B-201ENST00000314144 1838 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL6A2P12110 KHNYN-201ENST00000251343 6725 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL6A2P12110 PLD2-201ENST00000263088 3503 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL6A2P12110 PTPRO-201ENST00000281171 5301 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL6A2P12110 AC082651.3-201ENST00000474667 1947 ntTSL 2 BASIC14.17□□□□□ -0.14
COL6A2P12110 SLC26A6-213ENST00000455886 2460 ntTSL 2 BASIC14.17□□□□□ -0.14
COL6A2P12110 MAP2K3-214ENST00000613338 2029 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
COL6A2P12110 SH2D3C-201ENST00000314830 3124 ntAPPRIS P4 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL6A2P12110 NEFH-201ENST00000310624 3783 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL6A2P12110 NFATC3-203ENST00000349223 6328 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
COL6A2P12110 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL6A2P12110 E2F3P2-201ENST00000447755 1422 ntBASIC14.16□□□□□ -0.14
COL6A2P12110 PRDM16-206ENST00000511072 4282 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
COL6A2P12110 OSBPL3-201ENST00000313367 6760 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL6A2P12110 APCDD1L-AS1-203ENST00000427140 2092 ntTSL 2 BASIC14.16□□□□□ -0.14
COL6A2P12110 LAMP2-203ENST00000434600 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL6A2P12110 CERS6-202ENST00000392687 6851 ntAPPRIS ALT1 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL6A2P12110 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
COL6A2P12110 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC14.16□□□□□ -0.14
COL6A2P12110 STAT4-202ENST00000392320 2822 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL6A2P12110 PARVB-201ENST00000338758 5429 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL6A2P12110 ARL10-201ENST00000310389 10845 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
COL6A2P12110 SCNN1A-201ENST00000228916 3135 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL6A2P12110 OSBP2-219ENST00000535268 3248 ntTSL 2 BASIC14.16□□□□□ -0.14
COL6A2P12110 AFDN-211ENST00000447894 5475 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
COL6A2P12110 AC015802.6-201ENST00000640006 5654 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
COL6A2P12110 ACTR2-202ENST00000377982 2685 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
COL6A2P12110 HFE-202ENST00000317896 1922 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
COL6A2P12110 NPFF-201ENST00000267017 592 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL6A2P12110 TSPO-201ENST00000329563 955 ntAPPRIS P1 TSL 3 BASIC14.16□□□□□ -0.14
COL6A2P12110 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
COL6A2P12110 CALY-203ENST00000368558 825 ntTSL 5 BASIC14.16□□□□□ -0.14
COL6A2P12110 FAM122C-203ENST00000414371 2119 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
COL6A2P12110 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC14.16□□□□□ -0.14
COL6A2P12110 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
COL6A2P12110 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC14.16□□□□□ -0.14
COL6A2P12110 HIST2H2BB-201ENST00000449108 381 ntBASIC14.16□□□□□ -0.14
COL6A2P12110 FXYD6-202ENST00000524656 1033 ntAPPRIS P2 TSL 3 BASIC14.16□□□□□ -0.14
COL6A2P12110 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC14.16□□□□□ -0.14
COL6A2P12110 RNH1-224ENST00000534797 2973 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL6A2P12110 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
COL6A2P12110 AC140658.4-201ENST00000561990 352 ntBASIC14.16□□□□□ -0.14
COL6A2P12110 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
COL6A2P12110 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
COL6A2P12110 TECR-220ENST00000600083 1204 ntTSL 2 BASIC14.16□□□□□ -0.14
COL6A2P12110 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC14.16□□□□□ -0.14
COL6A2P12110 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC14.16□□□□□ -0.14
COL6A2P12110 AC025048.6-201ENST00000634326 1161 ntBASIC14.16□□□□□ -0.14
COL6A2P12110 G3BP2-202ENST00000359707 4883 ntAPPRIS P4 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL6A2P12110 AL356258.1-201ENST00000605929 2246 ntTSL 2 BASIC14.16□□□□□ -0.14
COL6A2P12110 MKRN1-201ENST00000255977 3151 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 72.5 ms