Protein–RNA interactions for Protein: Q9P244

LRFN1, Leucine-rich repeat and fibronectin type III domain-containing protein 1, humanhuman

Predictions only

Length 771 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN1Q9P244 MARK2P16-201ENST00000605714 1723 ntBASIC13.18□□□□□ -0.3
LRFN1Q9P244 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
LRFN1Q9P244 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
LRFN1Q9P244 NYAP1-201ENST00000300179 3581 ntAPPRIS P1 TSL 2 BASIC13.18□□□□□ -0.3
LRFN1Q9P244 SUOX-202ENST00000356124 2306 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
LRFN1Q9P244 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC13.18□□□□□ -0.3
LRFN1Q9P244 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
LRFN1Q9P244 TRIM45-201ENST00000256649 3515 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
LRFN1Q9P244 TP53I11-201ENST00000308212 3683 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
LRFN1Q9P244 CLEC12A-AS1-201ENST00000420905 3956 ntTSL 2 BASIC13.18□□□□□ -0.3
LRFN1Q9P244 BAX-201ENST00000293288 1358 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
LRFN1Q9P244 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC13.18□□□□□ -0.3
LRFN1Q9P244 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
LRFN1Q9P244 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC13.18□□□□□ -0.3
LRFN1Q9P244 ACIN1-201ENST00000262710 4935 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
LRFN1Q9P244 CDK17-201ENST00000261211 4157 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
LRFN1Q9P244 TRIM56-201ENST00000306085 10952 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
LRFN1Q9P244 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC13.17□□□□□ -0.3
LRFN1Q9P244 PCBP1-AS1-214ENST00000419542 1309 ntTSL 5 BASIC13.17□□□□□ -0.3
LRFN1Q9P244 UBE2V2-205ENST00000521346 1322 ntTSL 3 BASIC13.17□□□□□ -0.3
LRFN1Q9P244 AC074138.1-201ENST00000611182 1303 ntBASIC13.17□□□□□ -0.3
LRFN1Q9P244 AC064801.2-201ENST00000625052 1303 ntBASIC13.17□□□□□ -0.3
LRFN1Q9P244 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC13.17□□□□□ -0.3
LRFN1Q9P244 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
LRFN1Q9P244 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC13.17□□□□□ -0.3
LRFN1Q9P244 PEX26-205ENST00000610387 3924 ntTSL 5 BASIC13.17□□□□□ -0.3
LRFN1Q9P244 ADGRE2-208ENST00000595839 2046 ntTSL 5 BASIC13.17□□□□□ -0.3
LRFN1Q9P244 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
LRFN1Q9P244 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC13.17□□□□□ -0.3
LRFN1Q9P244 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
LRFN1Q9P244 GJB1-203ENST00000374029 1587 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
LRFN1Q9P244 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
LRFN1Q9P244 AGRN-210ENST00000620552 7394 ntTSL 5 BASIC13.17□□□□□ -0.3
LRFN1Q9P244 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
LRFN1Q9P244 RASSF3-202ENST00000336061 1030 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
LRFN1Q9P244 SNRPC-202ENST00000374017 1054 ntTSL 2 BASIC13.17□□□□□ -0.3
LRFN1Q9P244 LYPLA2-202ENST00000374502 1072 ntTSL 2 BASIC13.17□□□□□ -0.3
LRFN1Q9P244 FOLR1-202ENST00000393676 996 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
LRFN1Q9P244 NACA-202ENST00000393891 1059 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
LRFN1Q9P244 VSIR-201ENST00000394957 4689 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
LRFN1Q9P244 GDAP1-202ENST00000434412 1228 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
LRFN1Q9P244 NAGK-204ENST00000443872 878 ntTSL 3 BASIC13.17□□□□□ -0.3
LRFN1Q9P244 AC093151.3-202ENST00000445073 709 ntTSL 3 BASIC13.17□□□□□ -0.3
LRFN1Q9P244 TPT1P11-201ENST00000458482 498 ntBASIC13.17□□□□□ -0.3
LRFN1Q9P244 EFCAB10-201ENST00000460135 717 ntTSL 2 BASIC13.17□□□□□ -0.3
LRFN1Q9P244 PGAP2-212ENST00000464906 1259 ntTSL 2 BASIC13.17□□□□□ -0.3
LRFN1Q9P244 FAM104A-206ENST00000583024 417 ntTSL 3 BASIC13.17□□□□□ -0.3
LRFN1Q9P244 TMEM205-210ENST00000588560 840 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
LRFN1Q9P244 SMIM22-209ENST00000591870 355 ntAPPRIS ALT2 TSL 2 BASIC13.17□□□□□ -0.3
LRFN1Q9P244 DYRK1B-208ENST00000601972 772 ntTSL 2 BASIC13.17□□□□□ -0.3
LRFN1Q9P244 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
LRFN1Q9P244 GHRHR-212ENST00000611037 923 ntTSL 5 BASIC13.17□□□□□ -0.3
LRFN1Q9P244 KRTAP10-4-203ENST00000622352 1244 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
LRFN1Q9P244 AL805961.1-201ENST00000642026 753 ntBASIC13.17□□□□□ -0.3
LRFN1Q9P244 DCHS1-201ENST00000299441 10765 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
LRFN1Q9P244 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
LRFN1Q9P244 AC007686.3-201ENST00000619017 3487 ntBASIC13.17□□□□□ -0.3
LRFN1Q9P244 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC13.17□□□□□ -0.3
LRFN1Q9P244 LACTB2-201ENST00000276590 1508 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
LRFN1Q9P244 ZSCAN5A-206ENST00000587492 1542 ntTSL 2 BASIC13.17□□□□□ -0.3
LRFN1Q9P244 PPFIA4-202ENST00000295706 6395 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
LRFN1Q9P244 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC13.17□□□□□ -0.3
LRFN1Q9P244 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
LRFN1Q9P244 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
LRFN1Q9P244 AC021683.1-201ENST00000585798 1767 ntTSL 5 BASIC13.17□□□□□ -0.3
LRFN1Q9P244 UBE3C-202ENST00000389103 1626 ntTSL 5 BASIC13.17□□□□□ -0.3
LRFN1Q9P244 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC13.17□□□□□ -0.3
LRFN1Q9P244 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC13.16□□□□□ -0.3
LRFN1Q9P244 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
LRFN1Q9P244 CCDC88A-204ENST00000413716 9586 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
LRFN1Q9P244 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
LRFN1Q9P244 EFHC1-227ENST00000637089 2133 ntTSL 5 BASIC13.16□□□□□ -0.3
LRFN1Q9P244 AC245100.1-201ENST00000452996 1331 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
LRFN1Q9P244 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
LRFN1Q9P244 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
LRFN1Q9P244 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
LRFN1Q9P244 LGALS12-202ENST00000340246 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
LRFN1Q9P244 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC13.16□□□□□ -0.3
LRFN1Q9P244 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC13.16□□□□□ -0.3
LRFN1Q9P244 DNAJC14-201ENST00000317269 3330 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
LRFN1Q9P244 NDUFB8-201ENST00000299166 671 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
LRFN1Q9P244 LAIR2-201ENST00000301202 699 ntAPPRIS P4 TSL 1 (best) BASIC13.16□□□□□ -0.3
LRFN1Q9P244 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
LRFN1Q9P244 SPAG11A-203ENST00000351436 534 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
LRFN1Q9P244 SPAG11B-204ENST00000361111 534 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
LRFN1Q9P244 AC131097.2-203ENST00000401641 507 ntAPPRIS ALT2 TSL 2 BASIC13.16□□□□□ -0.3
LRFN1Q9P244 AL139339.1-201ENST00000411906 657 ntTSL 2 BASIC13.16□□□□□ -0.3
LRFN1Q9P244 ZNF226-203ENST00000413984 716 ntTSL 3 BASIC13.16□□□□□ -0.3
LRFN1Q9P244 TAC3-208ENST00000441881 731 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
LRFN1Q9P244 AL139246.4-201ENST00000442305 514 ntTSL 3 BASIC13.16□□□□□ -0.3
LRFN1Q9P244 KLHDC8A-203ENST00000460687 1022 ntTSL 5 BASIC13.16□□□□□ -0.3
LRFN1Q9P244 LYRM4-206ENST00000468929 1168 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
LRFN1Q9P244 AC037486.1-201ENST00000523792 790 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
LRFN1Q9P244 AC106738.2-201ENST00000559802 557 ntTSL 4 BASIC13.16□□□□□ -0.3
LRFN1Q9P244 SKA2-205ENST00000580541 689 ntTSL 3 BASIC13.16□□□□□ -0.3
LRFN1Q9P244 FBXL12-202ENST00000585379 956 ntTSL 2 BASIC13.16□□□□□ -0.3
LRFN1Q9P244 PGPEP1-206ENST00000597431 545 ntTSL 5 BASIC13.16□□□□□ -0.3
LRFN1Q9P244 TAC3-211ENST00000615887 1120 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
LRFN1Q9P244 NR2F2-AS1-215ENST00000620029 1223 ntTSL 5 BASIC13.16□□□□□ -0.3
LRFN1Q9P244 COX6A1P2-201ENST00000620597 330 ntBASIC13.16□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 42.3 ms