Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 INS-IGF2-202ENST00000397270 828 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 RPSAP31-201ENST00000416648 895 ntBASIC4.48□□□□□ -1.69
SYNE1Q8NF91 PDIA3P2-201ENST00000428073 158 ntBASIC4.48□□□□□ -1.69
SYNE1Q8NF91 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 DNM1P30-201ENST00000563586 452 ntBASIC4.48□□□□□ -1.69
SYNE1Q8NF91 AC008133.1-201ENST00000584688 557 ntTSL 4 BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 RPL17P45-201ENST00000586289 509 ntBASIC4.48□□□□□ -1.69
SYNE1Q8NF91 WT1-AS_6.1-201ENST00000614919 121 ntBASIC4.48□□□□□ -1.69
SYNE1Q8NF91 AL603764.1-201ENST00000636452 321 ntBASIC4.48□□□□□ -1.69
SYNE1Q8NF91 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 AC138035.3-201ENST00000622706 2791 ntBASIC4.48□□□□□ -1.69
SYNE1Q8NF91 CANT1-201ENST00000302345 3534 ntAPPRIS P1 TSL 2 BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 JMJD6-208ENST00000617192 5517 ntTSL 5 BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 JARID2-201ENST00000341776 5755 ntAPPRIS P3 TSL 1 (best) BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 AL009178.2-201ENST00000597278 2719 ntBASIC4.48□□□□□ -1.69
SYNE1Q8NF91 SYK-203ENST00000375751 4936 ntAPPRIS ALT2 TSL 1 (best) BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 GDPD5-204ENST00000526177 4150 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 SUN2-202ENST00000405510 4055 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 AL118508.1-202ENST00000411595 709 ntTSL 2 BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 AC008406.1-201ENST00000509530 541 ntTSL 3 BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 LINC01629-201ENST00000553613 581 ntTSL 4 BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 LINC00528-201ENST00000600723 2160 ntBASIC4.48□□□□□ -1.69
SYNE1Q8NF91 OSER1-201ENST00000255174 1572 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 PPP6C-202ENST00000415905 4172 ntTSL 2 BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 MYBBP1A-201ENST00000254718 4807 ntAPPRIS P3 TSL 1 (best) BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 GLIS3-202ENST00000381971 3961 ntAPPRIS P1 TSL 5 BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 F2R-201ENST00000319211 3821 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 AC005840.4-201ENST00000541242 2494 ntBASIC4.48□□□□□ -1.69
SYNE1Q8NF91 AK1-202ENST00000373156 757 ntAPPRIS P1 TSL 3 BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 STX1A-202ENST00000395154 1022 ntTSL 3 BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 AC026316.1-201ENST00000398900 414 ntBASIC4.48□□□□□ -1.69
SYNE1Q8NF91 SCARNA21-201ENST00000517026 139 ntBASIC4.48□□□□□ -1.69
SYNE1Q8NF91 AC113192.2-201ENST00000525320 308 ntTSL 3 BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 ZBED6CL-201ENST00000343855 2933 ntAPPRIS P1 BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 PPP1R10-201ENST00000376511 4525 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 LCA5-202ENST00000392959 4719 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 MICAL1-202ENST00000358807 3645 ntAPPRIS P3 TSL 1 (best) BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 PEX5-207ENST00000455147 2689 ntAPPRIS P1 TSL 2 BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 HSD17B6-207ENST00000555805 1722 ntAPPRIS P1 TSL 5 BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 TP73-201ENST00000346387 4854 ntTSL 5 BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 PDE6G-201ENST00000331056 1029 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 TUBB8P8-201ENST00000458717 1058 ntBASIC4.48□□□□□ -1.69
SYNE1Q8NF91 PFN2-205ENST00000461868 613 ntTSL 2 BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 AC026410.1-201ENST00000507366 1101 ntBASIC4.48□□□□□ -1.69
SYNE1Q8NF91 AC103808.5-201ENST00000577797 462 ntTSL 3 BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 PIN1-207ENST00000588695 648 ntAPPRIS P1 TSL 2 BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 LINC00116-203ENST00000611969 441 ntAPPRIS ALT2 TSL 1 (best) BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 AC027601.3-201ENST00000622907 509 ntBASIC4.48□□□□□ -1.69
SYNE1Q8NF91 ZNF689-201ENST00000287461 3547 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 EHD1-201ENST00000320631 4551 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 PCDHGB1-201ENST00000523390 4590 ntAPPRIS P3 TSL 1 (best) BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 MASTL-201ENST00000342386 2968 ntTSL 2 BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 EGR1-201ENST00000239938 3138 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 DESI1-201ENST00000263256 3833 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 NAXD-201ENST00000309957 2659 ntAPPRIS P1 TSL 2 BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 C6orf52-201ENST00000259983 619 ntAPPRIS P2 TSL 5 BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 MAP2K3-201ENST00000316920 1246 ntTSL 5 BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 NDUFS6P1-201ENST00000485187 316 ntBASIC4.48□□□□□ -1.69
SYNE1Q8NF91 C15orf40-211ENST00000565712 559 ntTSL 3 BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 MIR4522-201ENST00000584932 87 ntBASIC4.48□□□□□ -1.69
SYNE1Q8NF91 MAP3K14-AS1-210ENST00000592422 831 ntTSL 3 BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 LHX6-210ENST00000559895 3587 ntTSL 2 BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 SPHK2-206ENST00000598088 2866 ntAPPRIS P3 TSL 1 (best) BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 PI4KB-202ENST00000368873 3340 ntTSL 2 BASIC4.48□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 50.5 ms