Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 ZNF100-201ENST00000305570 2283 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
NKX2-1P43699 ASS1-203ENST00000372393 1548 ntAPPRIS P1 TSL 5 BASIC11.8□□□□□ -0.52
NKX2-1P43699 TMEM164-203ENST00000372072 4975 ntAPPRIS ALT2 TSL 5 BASIC11.8□□□□□ -0.52
NKX2-1P43699 ING4-201ENST00000341550 1709 ntAPPRIS P3 TSL 1 (best) BASIC11.8□□□□□ -0.52
NKX2-1P43699 HYOU1-219ENST00000614711 3057 ntTSL 5 BASIC11.8□□□□□ -0.52
NKX2-1P43699 SERPINI1-201ENST00000295777 1907 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
NKX2-1P43699 LILRB2-202ENST00000391746 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
NKX2-1P43699 CSNK1G3-201ENST00000345990 4635 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
NKX2-1P43699 KLHL7-202ENST00000339077 5620 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
NKX2-1P43699 DGCR2-201ENST00000263196 4480 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
NKX2-1P43699 DGCR2-206ENST00000545799 4484 ntTSL 5 BASIC11.8□□□□□ -0.52
NKX2-1P43699 PTH2R-201ENST00000272847 2713 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
NKX2-1P43699 CAP1-203ENST00000372797 3105 ntAPPRIS P3 TSL 1 (best) BASIC11.8□□□□□ -0.52
NKX2-1P43699 CCT6P3-201ENST00000419314 3702 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
NKX2-1P43699 ETS2-201ENST00000360214 3936 ntAPPRIS P1 TSL 2 BASIC11.8□□□□□ -0.52
NKX2-1P43699 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
NKX2-1P43699 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC11.79□□□□□ -0.52
NKX2-1P43699 ARAP1-204ENST00000393609 5145 ntAPPRIS ALT2 TSL 2 BASIC11.79□□□□□ -0.52
NKX2-1P43699 PPT2-245ENST00000361568 1759 ntAPPRIS P4 TSL 1 (best) BASIC11.79□□□□□ -0.52
NKX2-1P43699 SLC6A2-205ENST00000566163 1759 ntTSL 5 BASIC11.79□□□□□ -0.52
NKX2-1P43699 DIRAS3-201ENST00000370981 1973 ntAPPRIS P1 TSL 2 BASIC11.79□□□□□ -0.52
NKX2-1P43699 APOBEC3D-202ENST00000427494 1961 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
NKX2-1P43699 CCDC117-201ENST00000249064 3985 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
NKX2-1P43699 MFSD8-241ENST00000641686 4991 ntAPPRIS P1 BASIC11.79□□□□□ -0.52
NKX2-1P43699 CANX-202ENST00000452673 4207 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
NKX2-1P43699 MSH2-206ENST00000543555 3024 ntTSL 2 BASIC11.79□□□□□ -0.52
NKX2-1P43699 GCM2-201ENST00000379491 2441 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
NKX2-1P43699 UGGT2-201ENST00000376712 2240 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
NKX2-1P43699 NBEA-204ENST00000400445 11119 ntAPPRIS P2 TSL 5 BASIC11.79□□□□□ -0.52
NKX2-1P43699 KRT33B-201ENST00000251646 1607 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
NKX2-1P43699 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC11.79□□□□□ -0.52
NKX2-1P43699 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
NKX2-1P43699 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
NKX2-1P43699 SECISBP2-202ENST00000375807 3462 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
NKX2-1P43699 STRIP2-202ENST00000435494 2866 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
NKX2-1P43699 LINC01833-203ENST00000437916 2880 ntTSL 3 BASIC11.79□□□□□ -0.52
NKX2-1P43699 SLC25A26-202ENST00000354883 2673 ntAPPRIS P1 TSL 2 BASIC11.79□□□□□ -0.52
NKX2-1P43699 PIK3R5-220ENST00000623421 4318 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
NKX2-1P43699 BDNF-208ENST00000418212 4125 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
NKX2-1P43699 CAMKV-215ENST00000488336 2905 ntTSL 2 BASIC11.79□□□□□ -0.52
NKX2-1P43699 CHRND-206ENST00000543200 2918 ntTSL 2 BASIC11.79□□□□□ -0.52
NKX2-1P43699 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC11.79□□□□□ -0.52
NKX2-1P43699 SLC38A1-204ENST00000546893 2332 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
NKX2-1P43699 ARHGAP31-201ENST00000264245 9317 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
NKX2-1P43699 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
NKX2-1P43699 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
NKX2-1P43699 RN7SKP230-201ENST00000365642 335 ntBASIC11.79□□□□□ -0.52
NKX2-1P43699 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC11.79□□□□□ -0.52
NKX2-1P43699 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC11.79□□□□□ -0.52
NKX2-1P43699 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC11.79□□□□□ -0.52
NKX2-1P43699 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC11.79□□□□□ -0.52
NKX2-1P43699 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC11.79□□□□□ -0.52
NKX2-1P43699 BAD-202ENST00000394531 631 ntTSL 3 BASIC11.79□□□□□ -0.52
NKX2-1P43699 AC016730.1-201ENST00000420828 832 ntTSL 2 BASIC11.79□□□□□ -0.52
NKX2-1P43699 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC11.79□□□□□ -0.52
NKX2-1P43699 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC11.79□□□□□ -0.52
NKX2-1P43699 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC11.79□□□□□ -0.52
NKX2-1P43699 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC11.79□□□□□ -0.52
NKX2-1P43699 FAM86GP-201ENST00000448322 971 ntBASIC11.79□□□□□ -0.52
NKX2-1P43699 KLF2P3-201ENST00000451977 1087 ntBASIC11.79□□□□□ -0.52
NKX2-1P43699 AL589987.1-201ENST00000453380 819 ntBASIC11.79□□□□□ -0.52
NKX2-1P43699 RHOA-206ENST00000454011 889 ntTSL 2 BASIC11.79□□□□□ -0.52
NKX2-1P43699 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
NKX2-1P43699 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC11.79□□□□□ -0.52
NKX2-1P43699 RN7SL399P-201ENST00000471648 279 ntBASIC11.79□□□□□ -0.52
NKX2-1P43699 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC11.79□□□□□ -0.52
NKX2-1P43699 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC11.79□□□□□ -0.52
NKX2-1P43699 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC11.79□□□□□ -0.52
NKX2-1P43699 BAD-207ENST00000544785 525 ntTSL 3 BASIC11.79□□□□□ -0.52
NKX2-1P43699 AC140878.1-201ENST00000565277 250 ntBASIC11.79□□□□□ -0.52
NKX2-1P43699 LDLRAD4-208ENST00000586765 844 ntTSL 2 BASIC11.79□□□□□ -0.52
NKX2-1P43699 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC11.79□□□□□ -0.52
NKX2-1P43699 SRD5A3P1-201ENST00000603021 949 ntBASIC11.79□□□□□ -0.52
NKX2-1P43699 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC11.79□□□□□ -0.52
NKX2-1P43699 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC11.79□□□□□ -0.52
NKX2-1P43699 DFFA-202ENST00000377038 6032 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
NKX2-1P43699 PPP1R11-205ENST00000376772 1731 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
NKX2-1P43699 ZNF568-206ENST00000455427 2378 ntTSL 2 BASIC11.79□□□□□ -0.52
NKX2-1P43699 UNK-205ENST00000589666 3925 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
NKX2-1P43699 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC11.79□□□□□ -0.52
NKX2-1P43699 GFPT2-201ENST00000253778 3093 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
NKX2-1P43699 PCDHB9-201ENST00000316105 4415 ntAPPRIS P1 BASIC11.79□□□□□ -0.52
NKX2-1P43699 TRIM26-267ENST00000453195 3318 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
NKX2-1P43699 URGCP-207ENST00000453200 4042 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
NKX2-1P43699 MCC-201ENST00000302475 8257 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
NKX2-1P43699 ZBTB42-201ENST00000342537 3800 ntAPPRIS P1 BASIC11.79□□□□□ -0.52
NKX2-1P43699 AL772337.1-201ENST00000399186 2014 ntTSL 5 BASIC11.79□□□□□ -0.52
NKX2-1P43699 SPICE1-201ENST00000295872 5417 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
NKX2-1P43699 FAM149A-203ENST00000389354 1815 ntAPPRIS ALT2 TSL 5 BASIC11.79□□□□□ -0.52
NKX2-1P43699 DDC-214ENST00000622873 1839 ntTSL 3 BASIC11.79□□□□□ -0.52
NKX2-1P43699 POLD1-210ENST00000599857 3435 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
NKX2-1P43699 PCDHA2-202ENST00000520672 3056 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
NKX2-1P43699 OPLAH-204ENST00000618853 4031 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
NKX2-1P43699 AJAP1-202ENST00000378191 11666 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
NKX2-1P43699 RANBP17-219ENST00000523189 4588 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
NKX2-1P43699 RBM15-203ENST00000602849 3368 ntAPPRIS P1 BASIC11.78□□□□□ -0.52
NKX2-1P43699 NPNT-211ENST00000506666 2187 ntTSL 2 BASIC11.78□□□□□ -0.52
NKX2-1P43699 MOV10L1-202ENST00000354853 1701 ntTSL 2 BASIC11.78□□□□□ -0.52
NKX2-1P43699 APOF-201ENST00000398189 1715 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
NKX2-1P43699 EWSAT1-201ENST00000415504 2214 ntTSL 2 BASIC11.78□□□□□ -0.52
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms