Protein–RNA interactions for Protein: Q9Y566

SHANK1, SH3 and multiple ankyrin repeat domains protein 1, humanhuman

Predictions only

Length 2,161 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1Q9Y566 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC20.53■□□□□ 0.88
SHANK1Q9Y566 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC20.53■□□□□ 0.88
SHANK1Q9Y566 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC20.53■□□□□ 0.88
SHANK1Q9Y566 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SHANK1Q9Y566 AC012414.1-201ENST00000556676 535 ntBASIC20.53■□□□□ 0.88
SHANK1Q9Y566 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SHANK1Q9Y566 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
SHANK1Q9Y566 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SHANK1Q9Y566 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
SHANK1Q9Y566 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC20.53■□□□□ 0.88
SHANK1Q9Y566 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC20.53■□□□□ 0.88
SHANK1Q9Y566 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SHANK1Q9Y566 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
SHANK1Q9Y566 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
SHANK1Q9Y566 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SHANK1Q9Y566 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
SHANK1Q9Y566 AC004911.1-201ENST00000416316 871 ntBASIC20.52■□□□□ 0.88
SHANK1Q9Y566 AC123595.1-201ENST00000440769 1046 ntBASIC20.52■□□□□ 0.88
SHANK1Q9Y566 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SHANK1Q9Y566 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SHANK1Q9Y566 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SHANK1Q9Y566 AC145676.1-201ENST00000514988 2004 ntBASIC20.52■□□□□ 0.88
SHANK1Q9Y566 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SHANK1Q9Y566 STK32C-205ENST00000456004 607 ntTSL 2 BASIC20.52■□□□□ 0.88
SHANK1Q9Y566 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SHANK1Q9Y566 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.87
SHANK1Q9Y566 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
SHANK1Q9Y566 ME3-201ENST00000323418 1068 ntTSL 5 BASIC20.51■□□□□ 0.87
SHANK1Q9Y566 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC20.51■□□□□ 0.87
SHANK1Q9Y566 MIR3181-201ENST00000578512 73 ntBASIC20.51■□□□□ 0.87
SHANK1Q9Y566 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SHANK1Q9Y566 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SHANK1Q9Y566 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC20.51■□□□□ 0.87
SHANK1Q9Y566 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SHANK1Q9Y566 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SHANK1Q9Y566 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SHANK1Q9Y566 AC126544.1-201ENST00000580842 1059 ntBASIC20.51■□□□□ 0.87
SHANK1Q9Y566 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC20.5■□□□□ 0.87
SHANK1Q9Y566 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC20.5■□□□□ 0.87
SHANK1Q9Y566 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC20.5■□□□□ 0.87
SHANK1Q9Y566 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SHANK1Q9Y566 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SHANK1Q9Y566 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SHANK1Q9Y566 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SHANK1Q9Y566 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
SHANK1Q9Y566 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC20.49■□□□□ 0.87
SHANK1Q9Y566 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
SHANK1Q9Y566 AL358852.1-201ENST00000623174 1268 ntBASIC20.49■□□□□ 0.87
SHANK1Q9Y566 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
SHANK1Q9Y566 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SHANK1Q9Y566 DUSP8P4-201ENST00000399538 1761 ntBASIC20.49■□□□□ 0.87
SHANK1Q9Y566 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SHANK1Q9Y566 DLX3-202ENST00000512495 834 ntTSL 2 BASIC20.49■□□□□ 0.87
SHANK1Q9Y566 TSPY26P-201ENST00000476365 1326 ntBASIC20.49■□□□□ 0.87
SHANK1Q9Y566 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
SHANK1Q9Y566 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SHANK1Q9Y566 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC20.48■□□□□ 0.87
SHANK1Q9Y566 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC20.48■□□□□ 0.87
SHANK1Q9Y566 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC20.48■□□□□ 0.87
SHANK1Q9Y566 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SHANK1Q9Y566 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC20.48■□□□□ 0.87
SHANK1Q9Y566 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
SHANK1Q9Y566 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
SHANK1Q9Y566 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SHANK1Q9Y566 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
SHANK1Q9Y566 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
SHANK1Q9Y566 KRT18P14-201ENST00000534205 1250 ntBASIC20.48■□□□□ 0.87
SHANK1Q9Y566 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SHANK1Q9Y566 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
SHANK1Q9Y566 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC20.47■□□□□ 0.87
SHANK1Q9Y566 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC20.47■□□□□ 0.87
SHANK1Q9Y566 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
SHANK1Q9Y566 MIR572-201ENST00000384983 95 ntBASIC20.47■□□□□ 0.87
SHANK1Q9Y566 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC20.47■□□□□ 0.87
SHANK1Q9Y566 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC20.47■□□□□ 0.87
SHANK1Q9Y566 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC20.47■□□□□ 0.87
SHANK1Q9Y566 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SHANK1Q9Y566 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC20.47■□□□□ 0.87
SHANK1Q9Y566 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
SHANK1Q9Y566 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC20.47■□□□□ 0.87
SHANK1Q9Y566 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
SHANK1Q9Y566 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
SHANK1Q9Y566 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC20.46■□□□□ 0.87
SHANK1Q9Y566 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC20.46■□□□□ 0.87
SHANK1Q9Y566 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
SHANK1Q9Y566 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
SHANK1Q9Y566 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SHANK1Q9Y566 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC20.46■□□□□ 0.87
SHANK1Q9Y566 AICDA-202ENST00000537228 667 ntTSL 5 BASIC20.46■□□□□ 0.87
SHANK1Q9Y566 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
SHANK1Q9Y566 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC20.46■□□□□ 0.87
SHANK1Q9Y566 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
SHANK1Q9Y566 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
SHANK1Q9Y566 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SHANK1Q9Y566 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
SHANK1Q9Y566 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
SHANK1Q9Y566 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SHANK1Q9Y566 VGF-203ENST00000611537 1622 ntTSL 5 BASIC20.45■□□□□ 0.86
SHANK1Q9Y566 VPS53-216ENST00000574029 585 ntTSL 4 BASIC20.45■□□□□ 0.86
SHANK1Q9Y566 CCDC92B-201ENST00000575506 885 ntBASIC20.45■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms