Protein–RNA interactions for Protein: Q9UPT8

ZC3H4, Zinc finger CCCH domain-containing protein 4, humanhuman

Known RBP Predictions only

Length 1,303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZC3H4Q9UPT8 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC27.66■■■□□ 2.02
ZC3H4Q9UPT8 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC27.66■■■□□ 2.02
ZC3H4Q9UPT8 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC27.66■■■□□ 2.02
ZC3H4Q9UPT8 MAP2K4P1-201ENST00000438453 1195 ntBASIC27.66■■■□□ 2.02
ZC3H4Q9UPT8 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC27.66■■■□□ 2.02
ZC3H4Q9UPT8 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC27.66■■■□□ 2.02
ZC3H4Q9UPT8 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC27.66■■■□□ 2.02
ZC3H4Q9UPT8 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC27.65■■■□□ 2.02
ZC3H4Q9UPT8 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC27.65■■■□□ 2.02
ZC3H4Q9UPT8 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC27.65■■■□□ 2.02
ZC3H4Q9UPT8 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC27.65■■■□□ 2.02
ZC3H4Q9UPT8 AL109923.1-201ENST00000618799 583 ntBASIC27.65■■■□□ 2.02
ZC3H4Q9UPT8 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC27.64■■■□□ 2.02
ZC3H4Q9UPT8 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC27.64■■■□□ 2.02
ZC3H4Q9UPT8 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC27.64■■■□□ 2.02
ZC3H4Q9UPT8 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC27.64■■■□□ 2.02
ZC3H4Q9UPT8 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC27.64■■■□□ 2.02
ZC3H4Q9UPT8 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC27.64■■■□□ 2.01
ZC3H4Q9UPT8 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC27.64■■■□□ 2.01
ZC3H4Q9UPT8 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC27.64■■■□□ 2.01
ZC3H4Q9UPT8 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC27.64■■■□□ 2.01
ZC3H4Q9UPT8 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC27.64■■■□□ 2.01
ZC3H4Q9UPT8 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC27.64■■■□□ 2.01
ZC3H4Q9UPT8 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC27.63■■■□□ 2.01
ZC3H4Q9UPT8 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC27.63■■■□□ 2.01
ZC3H4Q9UPT8 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC27.63■■■□□ 2.01
ZC3H4Q9UPT8 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC27.63■■■□□ 2.01
ZC3H4Q9UPT8 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC27.63■■■□□ 2.01
ZC3H4Q9UPT8 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC27.63■■■□□ 2.01
ZC3H4Q9UPT8 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC27.63■■■□□ 2.01
ZC3H4Q9UPT8 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC27.63■■■□□ 2.01
ZC3H4Q9UPT8 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC27.63■■■□□ 2.01
ZC3H4Q9UPT8 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC27.63■■■□□ 2.01
ZC3H4Q9UPT8 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC27.63■■■□□ 2.01
ZC3H4Q9UPT8 HSCB-202ENST00000398941 955 ntTSL 2 BASIC27.63■■■□□ 2.01
ZC3H4Q9UPT8 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC27.63■■■□□ 2.01
ZC3H4Q9UPT8 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC27.63■■■□□ 2.01
ZC3H4Q9UPT8 AC137761.2-201ENST00000561729 223 ntBASIC27.63■■■□□ 2.01
ZC3H4Q9UPT8 AC145350.3-201ENST00000569033 163 ntBASIC27.63■■■□□ 2.01
ZC3H4Q9UPT8 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC27.63■■■□□ 2.01
ZC3H4Q9UPT8 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC27.63■■■□□ 2.01
ZC3H4Q9UPT8 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC27.62■■■□□ 2.01
ZC3H4Q9UPT8 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC27.62■■■□□ 2.01
ZC3H4Q9UPT8 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC27.62■■■□□ 2.01
ZC3H4Q9UPT8 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC27.62■■■□□ 2.01
ZC3H4Q9UPT8 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC27.62■■■□□ 2.01
ZC3H4Q9UPT8 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC27.62■■■□□ 2.01
ZC3H4Q9UPT8 AC006970.2-201ENST00000450065 779 ntBASIC27.62■■■□□ 2.01
ZC3H4Q9UPT8 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC27.62■■■□□ 2.01
ZC3H4Q9UPT8 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC27.61■■■□□ 2.01
ZC3H4Q9UPT8 MPST-204ENST00000404393 1329 ntTSL 5 BASIC27.61■■■□□ 2.01
ZC3H4Q9UPT8 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC27.61■■■□□ 2.01
ZC3H4Q9UPT8 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC27.61■■■□□ 2.01
ZC3H4Q9UPT8 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC27.61■■■□□ 2.01
ZC3H4Q9UPT8 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC27.61■■■□□ 2.01
ZC3H4Q9UPT8 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC27.61■■■□□ 2.01
ZC3H4Q9UPT8 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC27.61■■■□□ 2.01
ZC3H4Q9UPT8 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC27.61■■■□□ 2.01
ZC3H4Q9UPT8 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC27.61■■■□□ 2.01
ZC3H4Q9UPT8 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC27.61■■■□□ 2.01
ZC3H4Q9UPT8 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC27.61■■■□□ 2.01
ZC3H4Q9UPT8 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC27.61■■■□□ 2.01
ZC3H4Q9UPT8 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC27.61■■■□□ 2.01
ZC3H4Q9UPT8 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC27.61■■■□□ 2.01
ZC3H4Q9UPT8 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC27.6■■■□□ 2.01
ZC3H4Q9UPT8 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC27.6■■■□□ 2.01
ZC3H4Q9UPT8 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC27.6■■■□□ 2.01
ZC3H4Q9UPT8 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC27.6■■■□□ 2.01
ZC3H4Q9UPT8 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC27.6■■■□□ 2.01
ZC3H4Q9UPT8 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC27.6■■■□□ 2.01
ZC3H4Q9UPT8 LHPP-203ENST00000392757 840 ntTSL 3 BASIC27.6■■■□□ 2.01
ZC3H4Q9UPT8 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC27.6■■■□□ 2.01
ZC3H4Q9UPT8 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC27.6■■■□□ 2.01
ZC3H4Q9UPT8 AL022069.1-201ENST00000568025 1636 ntBASIC27.6■■■□□ 2.01
ZC3H4Q9UPT8 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC27.59■■■□□ 2.01
ZC3H4Q9UPT8 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC27.59■■■□□ 2.01
ZC3H4Q9UPT8 NT5C3AP1-201ENST00000394500 1012 ntBASIC27.59■■■□□ 2.01
ZC3H4Q9UPT8 NCF1B-203ENST00000435988 1254 ntBASIC27.59■■■□□ 2.01
ZC3H4Q9UPT8 KRT18P61-201ENST00000585825 1298 ntBASIC27.59■■■□□ 2.01
ZC3H4Q9UPT8 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC27.59■■■□□ 2.01
ZC3H4Q9UPT8 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC27.59■■■□□ 2.01
ZC3H4Q9UPT8 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC27.58■■■□□ 2.01
ZC3H4Q9UPT8 SHF-208ENST00000560734 1731 ntTSL 3 BASIC27.58■■■□□ 2.01
ZC3H4Q9UPT8 CD99P1-205ENST00000527459 561 ntBASIC27.58■■■□□ 2.01
ZC3H4Q9UPT8 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC27.58■■■□□ 2.01
ZC3H4Q9UPT8 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC27.58■■■□□ 2.01
ZC3H4Q9UPT8 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC27.58■■■□□ 2.01
ZC3H4Q9UPT8 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC27.58■■■□□ 2.01
ZC3H4Q9UPT8 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC27.57■■■□□ 2
ZC3H4Q9UPT8 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC27.57■■■□□ 2
ZC3H4Q9UPT8 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC27.57■■■□□ 2
ZC3H4Q9UPT8 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC27.57■■■□□ 2
ZC3H4Q9UPT8 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC27.57■■■□□ 2
ZC3H4Q9UPT8 CROCCP5-201ENST00000436658 830 ntBASIC27.57■■■□□ 2
ZC3H4Q9UPT8 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC27.57■■■□□ 2
ZC3H4Q9UPT8 BID-214ENST00000617586 542 ntTSL 5 BASIC27.57■■■□□ 2
ZC3H4Q9UPT8 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC27.57■■■□□ 2
ZC3H4Q9UPT8 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC27.57■■■□□ 2
ZC3H4Q9UPT8 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC27.56■■■□□ 2
ZC3H4Q9UPT8 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC27.56■■■□□ 2
Retrieved 100 of 98,524 protein–RNA pairs in 17 ms