Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
VPS4AQ9UN37 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
VPS4AQ9UN37 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC21.72■■□□□ 1.07
VPS4AQ9UN37 AL161729.1-201ENST00000604104 1402 ntBASIC21.72■■□□□ 1.07
VPS4AQ9UN37 AC068473.5-201ENST00000616428 2072 ntBASIC21.71■■□□□ 1.07
VPS4AQ9UN37 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
VPS4AQ9UN37 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
VPS4AQ9UN37 AC092666.2-201ENST00000613287 246 ntBASIC21.71■■□□□ 1.07
VPS4AQ9UN37 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
VPS4AQ9UN37 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC21.71■■□□□ 1.07
VPS4AQ9UN37 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
VPS4AQ9UN37 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
VPS4AQ9UN37 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
VPS4AQ9UN37 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC21.71■■□□□ 1.07
VPS4AQ9UN37 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
VPS4AQ9UN37 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
VPS4AQ9UN37 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC21.7■■□□□ 1.07
VPS4AQ9UN37 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
VPS4AQ9UN37 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC21.7■■□□□ 1.06
VPS4AQ9UN37 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC21.7■■□□□ 1.06
VPS4AQ9UN37 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC21.7■■□□□ 1.06
VPS4AQ9UN37 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
VPS4AQ9UN37 AL117332.1-201ENST00000622628 974 ntBASIC21.7■■□□□ 1.06
VPS4AQ9UN37 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
VPS4AQ9UN37 C9orf163-202ENST00000624034 2573 ntBASIC21.7■■□□□ 1.06
VPS4AQ9UN37 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC21.7■■□□□ 1.06
VPS4AQ9UN37 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
VPS4AQ9UN37 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC21.69■■□□□ 1.06
VPS4AQ9UN37 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC21.69■■□□□ 1.06
VPS4AQ9UN37 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
VPS4AQ9UN37 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC21.69■■□□□ 1.06
VPS4AQ9UN37 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC21.69■■□□□ 1.06
VPS4AQ9UN37 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
VPS4AQ9UN37 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC21.69■■□□□ 1.06
VPS4AQ9UN37 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
VPS4AQ9UN37 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
VPS4AQ9UN37 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC21.69■■□□□ 1.06
VPS4AQ9UN37 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC21.69■■□□□ 1.06
VPS4AQ9UN37 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
VPS4AQ9UN37 AL356740.2-201ENST00000601559 647 ntBASIC21.69■■□□□ 1.06
VPS4AQ9UN37 AC010997.5-201ENST00000609182 354 ntBASIC21.69■■□□□ 1.06
VPS4AQ9UN37 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
VPS4AQ9UN37 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC21.69■■□□□ 1.06
VPS4AQ9UN37 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.06
VPS4AQ9UN37 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
VPS4AQ9UN37 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC21.68■■□□□ 1.06
VPS4AQ9UN37 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC21.68■■□□□ 1.06
VPS4AQ9UN37 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
VPS4AQ9UN37 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC21.68■■□□□ 1.06
VPS4AQ9UN37 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC21.68■■□□□ 1.06
VPS4AQ9UN37 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
VPS4AQ9UN37 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
VPS4AQ9UN37 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC21.68■■□□□ 1.06
VPS4AQ9UN37 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC21.68■■□□□ 1.06
VPS4AQ9UN37 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
VPS4AQ9UN37 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
VPS4AQ9UN37 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
VPS4AQ9UN37 CD37-213ENST00000598095 1598 ntTSL 2 BASIC21.67■■□□□ 1.06
VPS4AQ9UN37 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC21.67■■□□□ 1.06
VPS4AQ9UN37 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC21.67■■□□□ 1.06
VPS4AQ9UN37 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC21.67■■□□□ 1.06
VPS4AQ9UN37 MTDHP2-201ENST00000601468 714 ntBASIC21.67■■□□□ 1.06
VPS4AQ9UN37 ME2-208ENST00000638937 2471 ntTSL 5 BASIC21.67■■□□□ 1.06
VPS4AQ9UN37 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
VPS4AQ9UN37 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
VPS4AQ9UN37 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
VPS4AQ9UN37 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
VPS4AQ9UN37 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC21.66■■□□□ 1.06
VPS4AQ9UN37 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
VPS4AQ9UN37 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC21.66■■□□□ 1.06
VPS4AQ9UN37 AC133561.4-201ENST00000566112 224 ntBASIC21.66■■□□□ 1.06
VPS4AQ9UN37 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC21.66■■□□□ 1.06
VPS4AQ9UN37 MIR3621-201ENST00000580529 85 ntBASIC21.66■■□□□ 1.06
VPS4AQ9UN37 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
VPS4AQ9UN37 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
VPS4AQ9UN37 MIR6724-1-201ENST00000616420 92 ntBASIC21.66■■□□□ 1.06
VPS4AQ9UN37 MIR6724-2-201ENST00000616483 92 ntBASIC21.66■■□□□ 1.06
VPS4AQ9UN37 MIR6724-4-201ENST00000617390 92 ntBASIC21.66■■□□□ 1.06
VPS4AQ9UN37 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
VPS4AQ9UN37 MIR6724-3-201ENST00000622482 92 ntBASIC21.66■■□□□ 1.06
VPS4AQ9UN37 NFE2L3P1-201ENST00000588207 1959 ntBASIC21.66■■□□□ 1.06
VPS4AQ9UN37 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
VPS4AQ9UN37 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC21.66■■□□□ 1.06
VPS4AQ9UN37 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
VPS4AQ9UN37 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
VPS4AQ9UN37 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
VPS4AQ9UN37 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC21.65■■□□□ 1.06
VPS4AQ9UN37 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC21.65■■□□□ 1.06
VPS4AQ9UN37 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC21.65■■□□□ 1.06
VPS4AQ9UN37 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
VPS4AQ9UN37 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
VPS4AQ9UN37 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC21.65■■□□□ 1.06
VPS4AQ9UN37 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
VPS4AQ9UN37 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC21.65■■□□□ 1.06
VPS4AQ9UN37 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
VPS4AQ9UN37 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
VPS4AQ9UN37 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
VPS4AQ9UN37 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
VPS4AQ9UN37 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
VPS4AQ9UN37 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC21.64■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 47 ms