Protein–RNA interactions for Protein: Q9HCK8

CHD8, Chromodomain-helicase-DNA-binding protein 8, humanhuman

Predictions only

Length 2,581 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD8Q9HCK8 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
CHD8Q9HCK8 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CHD8Q9HCK8 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
CHD8Q9HCK8 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC21.46■■□□□ 1.03
CHD8Q9HCK8 MFSD11-216ENST00000590393 1141 ntBASIC21.46■■□□□ 1.03
CHD8Q9HCK8 ITM2C-210ENST00000620962 501 ntBASIC21.46■■□□□ 1.03
CHD8Q9HCK8 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
CHD8Q9HCK8 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CHD8Q9HCK8 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CHD8Q9HCK8 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
CHD8Q9HCK8 RPS2P52-201ENST00000469610 820 ntBASIC21.45■■□□□ 1.03
CHD8Q9HCK8 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC21.45■■□□□ 1.02
CHD8Q9HCK8 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
CHD8Q9HCK8 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC21.45■■□□□ 1.02
CHD8Q9HCK8 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CHD8Q9HCK8 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
CHD8Q9HCK8 SLC29A4P1-201ENST00000398760 971 ntBASIC21.44■■□□□ 1.02
CHD8Q9HCK8 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC21.44■■□□□ 1.02
CHD8Q9HCK8 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC21.44■■□□□ 1.02
CHD8Q9HCK8 VGF-203ENST00000611537 1622 ntTSL 5 BASIC21.44■■□□□ 1.02
CHD8Q9HCK8 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC21.44■■□□□ 1.02
CHD8Q9HCK8 DRD5P2-201ENST00000421395 2012 ntBASIC21.44■■□□□ 1.02
CHD8Q9HCK8 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC21.43■■□□□ 1.02
CHD8Q9HCK8 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
CHD8Q9HCK8 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
CHD8Q9HCK8 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
CHD8Q9HCK8 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CHD8Q9HCK8 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC21.43■■□□□ 1.02
CHD8Q9HCK8 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CHD8Q9HCK8 METTL26-203ENST00000397664 604 ntTSL 2 BASIC21.43■■□□□ 1.02
CHD8Q9HCK8 TPRG1LP1-201ENST00000598702 760 ntBASIC21.43■■□□□ 1.02
CHD8Q9HCK8 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC21.43■■□□□ 1.02
CHD8Q9HCK8 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC21.43■■□□□ 1.02
CHD8Q9HCK8 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC21.43■■□□□ 1.02
CHD8Q9HCK8 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CHD8Q9HCK8 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC21.43■■□□□ 1.02
CHD8Q9HCK8 NKILA-201ENST00000613231 537 ntTSL 4 BASIC21.43■■□□□ 1.02
CHD8Q9HCK8 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
CHD8Q9HCK8 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
CHD8Q9HCK8 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
CHD8Q9HCK8 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC21.42■■□□□ 1.02
CHD8Q9HCK8 AC098590.1-201ENST00000468126 897 ntBASIC21.42■■□□□ 1.02
CHD8Q9HCK8 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC21.42■■□□□ 1.02
CHD8Q9HCK8 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
CHD8Q9HCK8 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
CHD8Q9HCK8 KRT18P29-201ENST00000397031 1267 ntBASIC21.42■■□□□ 1.02
CHD8Q9HCK8 GCSHP5-201ENST00000443090 522 ntBASIC21.42■■□□□ 1.02
CHD8Q9HCK8 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC21.42■■□□□ 1.02
CHD8Q9HCK8 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC21.42■■□□□ 1.02
CHD8Q9HCK8 SLC7A5P2-201ENST00000553010 536 ntBASIC21.42■■□□□ 1.02
CHD8Q9HCK8 SHD-204ENST00000599689 1729 ntTSL 5 BASIC21.41■■□□□ 1.02
CHD8Q9HCK8 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
CHD8Q9HCK8 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
CHD8Q9HCK8 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
CHD8Q9HCK8 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC21.41■■□□□ 1.02
CHD8Q9HCK8 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC21.41■■□□□ 1.02
CHD8Q9HCK8 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CHD8Q9HCK8 TSPY6P-201ENST00000448518 926 ntBASIC21.41■■□□□ 1.02
CHD8Q9HCK8 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CHD8Q9HCK8 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC21.4■■□□□ 1.02
CHD8Q9HCK8 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CHD8Q9HCK8 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC21.4■■□□□ 1.02
CHD8Q9HCK8 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
CHD8Q9HCK8 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
CHD8Q9HCK8 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
CHD8Q9HCK8 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC21.4■■□□□ 1.02
CHD8Q9HCK8 TFG-210ENST00000620299 1289 ntTSL 5 BASIC21.4■■□□□ 1.02
CHD8Q9HCK8 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
CHD8Q9HCK8 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC21.39■■□□□ 1.01
CHD8Q9HCK8 MIR1224-201ENST00000408193 85 ntBASIC21.39■■□□□ 1.01
CHD8Q9HCK8 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC21.39■■□□□ 1.01
CHD8Q9HCK8 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
CHD8Q9HCK8 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC21.39■■□□□ 1.01
CHD8Q9HCK8 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
CHD8Q9HCK8 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
CHD8Q9HCK8 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC21.39■■□□□ 1.01
CHD8Q9HCK8 AC009086.3-201ENST00000623486 1008 ntBASIC21.39■■□□□ 1.01
CHD8Q9HCK8 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC21.38■■□□□ 1.01
CHD8Q9HCK8 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
CHD8Q9HCK8 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CHD8Q9HCK8 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC21.38■■□□□ 1.01
CHD8Q9HCK8 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
CHD8Q9HCK8 KRT19P1-201ENST00000405746 1186 ntBASIC21.38■■□□□ 1.01
CHD8Q9HCK8 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC21.38■■□□□ 1.01
CHD8Q9HCK8 pRNA.6-201ENST00000610482 90 ntBASIC21.38■■□□□ 1.01
CHD8Q9HCK8 pRNA.5-201ENST00000612139 90 ntBASIC21.38■■□□□ 1.01
CHD8Q9HCK8 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC21.38■■□□□ 1.01
CHD8Q9HCK8 pRNA.11-201ENST00000618423 90 ntBASIC21.38■■□□□ 1.01
CHD8Q9HCK8 pRNA.13-201ENST00000619112 90 ntBASIC21.38■■□□□ 1.01
CHD8Q9HCK8 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CHD8Q9HCK8 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC21.38■■□□□ 1.01
CHD8Q9HCK8 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CHD8Q9HCK8 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
CHD8Q9HCK8 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC21.38■■□□□ 1.01
CHD8Q9HCK8 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC21.37■■□□□ 1.01
CHD8Q9HCK8 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC21.37■■□□□ 1.01
CHD8Q9HCK8 AL596275.1-201ENST00000423464 877 ntBASIC21.37■■□□□ 1.01
CHD8Q9HCK8 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CHD8Q9HCK8 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CHD8Q9HCK8 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms