Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 AP003733.4-201ENST00000623785 1697 ntBASIC21.63■■□□□ 1.05
CLIP3Q96DZ5 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
CLIP3Q96DZ5 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CLIP3Q96DZ5 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC21.63■■□□□ 1.05
CLIP3Q96DZ5 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CLIP3Q96DZ5 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC21.63■■□□□ 1.05
CLIP3Q96DZ5 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
CLIP3Q96DZ5 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC21.63■■□□□ 1.05
CLIP3Q96DZ5 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC21.63■■□□□ 1.05
CLIP3Q96DZ5 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CLIP3Q96DZ5 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CLIP3Q96DZ5 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
CLIP3Q96DZ5 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
CLIP3Q96DZ5 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
CLIP3Q96DZ5 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CLIP3Q96DZ5 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
CLIP3Q96DZ5 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC21.62■■□□□ 1.05
CLIP3Q96DZ5 CD37-213ENST00000598095 1598 ntTSL 2 BASIC21.62■■□□□ 1.05
CLIP3Q96DZ5 AC135279.3-201ENST00000610945 1311 ntBASIC21.62■■□□□ 1.05
CLIP3Q96DZ5 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CLIP3Q96DZ5 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CLIP3Q96DZ5 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CLIP3Q96DZ5 MIR935-201ENST00000401179 91 ntBASIC21.62■■□□□ 1.05
CLIP3Q96DZ5 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
CLIP3Q96DZ5 DUX4L19-201ENST00000557448 1267 ntBASIC21.62■■□□□ 1.05
CLIP3Q96DZ5 AC092171.4-201ENST00000609130 632 ntBASIC21.62■■□□□ 1.05
CLIP3Q96DZ5 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC21.62■■□□□ 1.05
CLIP3Q96DZ5 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC21.62■■□□□ 1.05
CLIP3Q96DZ5 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CLIP3Q96DZ5 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC21.62■■□□□ 1.05
CLIP3Q96DZ5 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CLIP3Q96DZ5 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC21.62■■□□□ 1.05
CLIP3Q96DZ5 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC21.61■■□□□ 1.05
CLIP3Q96DZ5 CLDN5-201ENST00000403084 2357 ntBASIC21.61■■□□□ 1.05
CLIP3Q96DZ5 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC21.61■■□□□ 1.05
CLIP3Q96DZ5 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CLIP3Q96DZ5 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
CLIP3Q96DZ5 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
CLIP3Q96DZ5 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CLIP3Q96DZ5 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CLIP3Q96DZ5 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
CLIP3Q96DZ5 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC21.6■■□□□ 1.05
CLIP3Q96DZ5 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC21.6■■□□□ 1.05
CLIP3Q96DZ5 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC21.6■■□□□ 1.05
CLIP3Q96DZ5 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC21.6■■□□□ 1.05
CLIP3Q96DZ5 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
CLIP3Q96DZ5 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC21.6■■□□□ 1.05
CLIP3Q96DZ5 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
CLIP3Q96DZ5 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CLIP3Q96DZ5 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC21.6■■□□□ 1.05
CLIP3Q96DZ5 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC21.59■■□□□ 1.05
CLIP3Q96DZ5 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC21.59■■□□□ 1.05
CLIP3Q96DZ5 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC21.59■■□□□ 1.05
CLIP3Q96DZ5 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
CLIP3Q96DZ5 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
CLIP3Q96DZ5 AC009102.2-201ENST00000606772 1639 ntBASIC21.58■■□□□ 1.05
CLIP3Q96DZ5 TMEM202-AS1-202ENST00000565181 2325 ntBASIC21.58■■□□□ 1.05
CLIP3Q96DZ5 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC21.58■■□□□ 1.05
CLIP3Q96DZ5 AC024257.2-201ENST00000549699 147 ntBASIC21.58■■□□□ 1.05
CLIP3Q96DZ5 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
CLIP3Q96DZ5 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
CLIP3Q96DZ5 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
CLIP3Q96DZ5 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
CLIP3Q96DZ5 SYT6-210ENST00000641643 1587 ntBASIC21.57■■□□□ 1.04
CLIP3Q96DZ5 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
CLIP3Q96DZ5 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC21.57■■□□□ 1.04
CLIP3Q96DZ5 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC21.57■■□□□ 1.04
CLIP3Q96DZ5 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
CLIP3Q96DZ5 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CLIP3Q96DZ5 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC21.57■■□□□ 1.04
CLIP3Q96DZ5 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC21.57■■□□□ 1.04
CLIP3Q96DZ5 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC21.57■■□□□ 1.04
CLIP3Q96DZ5 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC21.57■■□□□ 1.04
CLIP3Q96DZ5 AC142381.2-201ENST00000566120 298 ntBASIC21.57■■□□□ 1.04
CLIP3Q96DZ5 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
CLIP3Q96DZ5 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
CLIP3Q96DZ5 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
CLIP3Q96DZ5 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC21.57■■□□□ 1.04
CLIP3Q96DZ5 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
CLIP3Q96DZ5 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
CLIP3Q96DZ5 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
CLIP3Q96DZ5 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC21.56■■□□□ 1.04
CLIP3Q96DZ5 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC21.56■■□□□ 1.04
CLIP3Q96DZ5 AC099791.2-201ENST00000605725 427 ntBASIC21.56■■□□□ 1.04
CLIP3Q96DZ5 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
CLIP3Q96DZ5 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
CLIP3Q96DZ5 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC21.55■■□□□ 1.04
CLIP3Q96DZ5 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
CLIP3Q96DZ5 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CLIP3Q96DZ5 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC21.55■■□□□ 1.04
CLIP3Q96DZ5 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
CLIP3Q96DZ5 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC21.54■■□□□ 1.04
CLIP3Q96DZ5 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC21.54■■□□□ 1.04
CLIP3Q96DZ5 ALDH1A3-203ENST00000557963 1670 ntBASIC21.54■■□□□ 1.04
CLIP3Q96DZ5 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
CLIP3Q96DZ5 SF1-220ENST00000626028 704 ntTSL 2 BASIC21.54■■□□□ 1.04
CLIP3Q96DZ5 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC21.54■■□□□ 1.04
CLIP3Q96DZ5 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CLIP3Q96DZ5 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC21.54■■□□□ 1.04
CLIP3Q96DZ5 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms