Protein–RNA interactions for Protein: Q96A23

CPNE4, Copine-4, humanhuman

Predicted RBP Predictions only

Length 557 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4Q96A23 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CPNE4Q96A23 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CPNE4Q96A23 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CPNE4Q96A23 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CPNE4Q96A23 QDPR-206ENST00000508623 601 ntTSL 3 BASIC20.25■□□□□ 0.83
CPNE4Q96A23 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC20.25■□□□□ 0.83
CPNE4Q96A23 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CPNE4Q96A23 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CPNE4Q96A23 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CPNE4Q96A23 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CPNE4Q96A23 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CPNE4Q96A23 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CPNE4Q96A23 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
CPNE4Q96A23 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CPNE4Q96A23 AC009102.2-201ENST00000606772 1639 ntBASIC20.24■□□□□ 0.83
CPNE4Q96A23 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CPNE4Q96A23 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CPNE4Q96A23 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CPNE4Q96A23 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CPNE4Q96A23 AL136116.3-201ENST00000402907 1138 ntBASIC20.23■□□□□ 0.83
CPNE4Q96A23 SRD5A1P1-201ENST00000442297 786 ntBASIC20.23■□□□□ 0.83
CPNE4Q96A23 ABCB10P4-201ENST00000566803 2184 ntBASIC20.23■□□□□ 0.83
CPNE4Q96A23 RASSF1-AS1-201ENST00000629828 790 ntBASIC20.23■□□□□ 0.83
CPNE4Q96A23 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CPNE4Q96A23 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CPNE4Q96A23 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CPNE4Q96A23 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CPNE4Q96A23 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CPNE4Q96A23 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CPNE4Q96A23 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CPNE4Q96A23 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CPNE4Q96A23 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC20.22■□□□□ 0.83
CPNE4Q96A23 MIR4466-201ENST00000606121 54 ntBASIC20.22■□□□□ 0.83
CPNE4Q96A23 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC20.22■□□□□ 0.83
CPNE4Q96A23 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CPNE4Q96A23 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
CPNE4Q96A23 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CPNE4Q96A23 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC20.22■□□□□ 0.83
CPNE4Q96A23 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CPNE4Q96A23 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CPNE4Q96A23 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CPNE4Q96A23 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC20.21■□□□□ 0.83
CPNE4Q96A23 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CPNE4Q96A23 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
CPNE4Q96A23 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC20.21■□□□□ 0.83
CPNE4Q96A23 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC20.21■□□□□ 0.83
CPNE4Q96A23 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC20.21■□□□□ 0.83
CPNE4Q96A23 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
CPNE4Q96A23 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CPNE4Q96A23 PEMT-206ENST00000435340 960 ntTSL 5 BASIC20.2■□□□□ 0.82
CPNE4Q96A23 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
CPNE4Q96A23 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC20.2■□□□□ 0.82
CPNE4Q96A23 GATM-206ENST00000558336 1522 ntTSL 2 BASIC20.2■□□□□ 0.82
CPNE4Q96A23 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CPNE4Q96A23 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
CPNE4Q96A23 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
CPNE4Q96A23 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CPNE4Q96A23 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CPNE4Q96A23 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC20.19■□□□□ 0.82
CPNE4Q96A23 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
CPNE4Q96A23 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
CPNE4Q96A23 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CPNE4Q96A23 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC20.19■□□□□ 0.82
CPNE4Q96A23 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC20.19■□□□□ 0.82
CPNE4Q96A23 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CPNE4Q96A23 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CPNE4Q96A23 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CPNE4Q96A23 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
CPNE4Q96A23 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
CPNE4Q96A23 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CPNE4Q96A23 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CPNE4Q96A23 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC20.19■□□□□ 0.82
CPNE4Q96A23 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
CPNE4Q96A23 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CPNE4Q96A23 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC20.18■□□□□ 0.82
CPNE4Q96A23 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CPNE4Q96A23 C17orf82-201ENST00000623772 1530 ntBASIC20.18■□□□□ 0.82
CPNE4Q96A23 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CPNE4Q96A23 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CPNE4Q96A23 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC20.18■□□□□ 0.82
CPNE4Q96A23 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC20.17■□□□□ 0.82
CPNE4Q96A23 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC20.17■□□□□ 0.82
CPNE4Q96A23 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
CPNE4Q96A23 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
CPNE4Q96A23 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC20.17■□□□□ 0.82
CPNE4Q96A23 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC20.17■□□□□ 0.82
CPNE4Q96A23 AC092171.4-201ENST00000609130 632 ntBASIC20.17■□□□□ 0.82
CPNE4Q96A23 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
CPNE4Q96A23 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CPNE4Q96A23 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CPNE4Q96A23 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
CPNE4Q96A23 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC20.16■□□□□ 0.82
CPNE4Q96A23 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CPNE4Q96A23 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CPNE4Q96A23 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CPNE4Q96A23 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CPNE4Q96A23 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CPNE4Q96A23 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CPNE4Q96A23 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CPNE4Q96A23 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms