Protein–RNA interactions for Protein: P50479

PDLIM4, PDZ and LIM domain protein 4, humanhuman

Predictions only

Length 330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4P50479 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
PDLIM4P50479 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
PDLIM4P50479 MIR939-201ENST00000401314 82 ntBASIC19.13■□□□□ 0.65
PDLIM4P50479 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
PDLIM4P50479 AC011298.3-201ENST00000615796 283 ntBASIC19.13■□□□□ 0.65
PDLIM4P50479 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC19.13■□□□□ 0.65
PDLIM4P50479 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
PDLIM4P50479 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC19.13■□□□□ 0.65
PDLIM4P50479 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC19.13■□□□□ 0.65
PDLIM4P50479 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
PDLIM4P50479 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
PDLIM4P50479 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC19.13■□□□□ 0.65
PDLIM4P50479 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
PDLIM4P50479 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
PDLIM4P50479 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC19.12■□□□□ 0.65
PDLIM4P50479 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
PDLIM4P50479 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
PDLIM4P50479 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
PDLIM4P50479 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
PDLIM4P50479 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
PDLIM4P50479 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
PDLIM4P50479 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
PDLIM4P50479 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
PDLIM4P50479 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
PDLIM4P50479 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
PDLIM4P50479 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
PDLIM4P50479 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
PDLIM4P50479 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
PDLIM4P50479 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
PDLIM4P50479 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC19.11■□□□□ 0.65
PDLIM4P50479 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
PDLIM4P50479 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
PDLIM4P50479 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
PDLIM4P50479 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
PDLIM4P50479 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
PDLIM4P50479 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
PDLIM4P50479 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC19.11■□□□□ 0.65
PDLIM4P50479 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
PDLIM4P50479 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC19.1■□□□□ 0.65
PDLIM4P50479 C17orf82-201ENST00000623772 1530 ntBASIC19.1■□□□□ 0.65
PDLIM4P50479 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
PDLIM4P50479 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
PDLIM4P50479 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
PDLIM4P50479 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
PDLIM4P50479 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC19.1■□□□□ 0.65
PDLIM4P50479 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC19.1■□□□□ 0.65
PDLIM4P50479 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC19.1■□□□□ 0.65
PDLIM4P50479 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
PDLIM4P50479 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
PDLIM4P50479 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
PDLIM4P50479 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
PDLIM4P50479 CD37-213ENST00000598095 1598 ntTSL 2 BASIC19.1■□□□□ 0.65
PDLIM4P50479 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
PDLIM4P50479 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
PDLIM4P50479 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
PDLIM4P50479 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
PDLIM4P50479 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
PDLIM4P50479 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC19.09■□□□□ 0.65
PDLIM4P50479 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
PDLIM4P50479 AC027682.1-201ENST00000562846 899 ntBASIC19.09■□□□□ 0.65
PDLIM4P50479 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
PDLIM4P50479 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC19.09■□□□□ 0.65
PDLIM4P50479 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC19.09■□□□□ 0.65
PDLIM4P50479 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC19.09■□□□□ 0.65
PDLIM4P50479 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
PDLIM4P50479 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC19.08■□□□□ 0.65
PDLIM4P50479 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC19.08■□□□□ 0.65
PDLIM4P50479 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
PDLIM4P50479 RASA4CP-201ENST00000424092 1398 ntBASIC19.08■□□□□ 0.65
PDLIM4P50479 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
PDLIM4P50479 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.64
PDLIM4P50479 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.64
PDLIM4P50479 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC19.08■□□□□ 0.64
PDLIM4P50479 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
PDLIM4P50479 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.64
PDLIM4P50479 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.64
PDLIM4P50479 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.64
PDLIM4P50479 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC19.08■□□□□ 0.64
PDLIM4P50479 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC19.08■□□□□ 0.64
PDLIM4P50479 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
PDLIM4P50479 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC19.07■□□□□ 0.64
PDLIM4P50479 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC19.07■□□□□ 0.64
PDLIM4P50479 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
PDLIM4P50479 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC19.07■□□□□ 0.64
PDLIM4P50479 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
PDLIM4P50479 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
PDLIM4P50479 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC19.07■□□□□ 0.64
PDLIM4P50479 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
PDLIM4P50479 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
PDLIM4P50479 HES6-206ENST00000409574 738 ntTSL 2 BASIC19.07■□□□□ 0.64
PDLIM4P50479 CA15P2-201ENST00000611168 834 ntBASIC19.07■□□□□ 0.64
PDLIM4P50479 AC009086.3-201ENST00000623486 1008 ntBASIC19.07■□□□□ 0.64
PDLIM4P50479 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
PDLIM4P50479 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
PDLIM4P50479 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC19.07■□□□□ 0.64
PDLIM4P50479 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC19.07■□□□□ 0.64
PDLIM4P50479 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
PDLIM4P50479 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
PDLIM4P50479 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
PDLIM4P50479 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms