Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC26.44■■□□□ 1.82
CTCFP49711 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC26.44■■□□□ 1.82
CTCFP49711 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC26.44■■□□□ 1.82
CTCFP49711 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC26.44■■□□□ 1.82
CTCFP49711 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC26.44■■□□□ 1.82
CTCFP49711 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC26.44■■□□□ 1.82
CTCFP49711 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC26.43■■□□□ 1.82
CTCFP49711 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
CTCFP49711 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC26.43■■□□□ 1.82
CTCFP49711 AP005435.1-201ENST00000529293 1178 ntBASIC26.43■■□□□ 1.82
CTCFP49711 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC26.43■■□□□ 1.82
CTCFP49711 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC26.43■■□□□ 1.82
CTCFP49711 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC26.43■■□□□ 1.82
CTCFP49711 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC26.42■■□□□ 1.82
CTCFP49711 KLF13-207ENST00000560473 489 ntTSL 3 BASIC26.42■■□□□ 1.82
CTCFP49711 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
CTCFP49711 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC26.42■■□□□ 1.82
CTCFP49711 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC26.41■■□□□ 1.82
CTCFP49711 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
CTCFP49711 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
CTCFP49711 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC26.41■■□□□ 1.82
CTCFP49711 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
CTCFP49711 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC26.41■■□□□ 1.82
CTCFP49711 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
CTCFP49711 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC26.4■■□□□ 1.82
CTCFP49711 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC26.4■■□□□ 1.82
CTCFP49711 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
CTCFP49711 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC26.4■■□□□ 1.82
CTCFP49711 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC26.4■■□□□ 1.82
CTCFP49711 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
CTCFP49711 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
CTCFP49711 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
CTCFP49711 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC26.39■■□□□ 1.82
CTCFP49711 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC26.39■■□□□ 1.82
CTCFP49711 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC26.39■■□□□ 1.82
CTCFP49711 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC26.39■■□□□ 1.82
CTCFP49711 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC26.39■■□□□ 1.81
CTCFP49711 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC26.39■■□□□ 1.81
CTCFP49711 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
CTCFP49711 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC26.38■■□□□ 1.81
CTCFP49711 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC26.38■■□□□ 1.81
CTCFP49711 AP004607.4-201ENST00000530158 1459 ntBASIC26.38■■□□□ 1.81
CTCFP49711 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
CTCFP49711 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC26.38■■□□□ 1.81
CTCFP49711 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC26.38■■□□□ 1.81
CTCFP49711 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC26.38■■□□□ 1.81
CTCFP49711 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC26.38■■□□□ 1.81
CTCFP49711 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC26.38■■□□□ 1.81
CTCFP49711 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC26.38■■□□□ 1.81
CTCFP49711 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
CTCFP49711 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
CTCFP49711 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC26.38■■□□□ 1.81
CTCFP49711 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC26.38■■□□□ 1.81
CTCFP49711 WWOX-218ENST00000627394 894 ntTSL 5 BASIC26.38■■□□□ 1.81
CTCFP49711 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC26.38■■□□□ 1.81
CTCFP49711 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC26.38■■□□□ 1.81
CTCFP49711 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
CTCFP49711 AC142472.1-201ENST00000612013 1741 ntBASIC26.37■■□□□ 1.81
CTCFP49711 pRNA.6-201ENST00000610482 90 ntBASIC26.37■■□□□ 1.81
CTCFP49711 pRNA.5-201ENST00000612139 90 ntBASIC26.37■■□□□ 1.81
CTCFP49711 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
CTCFP49711 pRNA.11-201ENST00000618423 90 ntBASIC26.37■■□□□ 1.81
CTCFP49711 pRNA.13-201ENST00000619112 90 ntBASIC26.37■■□□□ 1.81
CTCFP49711 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC26.37■■□□□ 1.81
CTCFP49711 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC26.36■■□□□ 1.81
CTCFP49711 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC26.36■■□□□ 1.81
CTCFP49711 PROC-203ENST00000409048 1586 ntTSL 5 BASIC26.36■■□□□ 1.81
CTCFP49711 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
CTCFP49711 MPST-204ENST00000404393 1329 ntTSL 5 BASIC26.36■■□□□ 1.81
CTCFP49711 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC26.36■■□□□ 1.81
CTCFP49711 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC26.36■■□□□ 1.81
CTCFP49711 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC26.35■■□□□ 1.81
CTCFP49711 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
CTCFP49711 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC26.35■■□□□ 1.81
CTCFP49711 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC26.35■■□□□ 1.81
CTCFP49711 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC26.35■■□□□ 1.81
CTCFP49711 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
CTCFP49711 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC26.34■■□□□ 1.81
CTCFP49711 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC26.34■■□□□ 1.81
CTCFP49711 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
CTCFP49711 MDK-213ENST00000617138 635 ntTSL 2 BASIC26.34■■□□□ 1.81
CTCFP49711 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
CTCFP49711 AL121832.2-201ENST00000610979 668 ntBASIC26.33■■□□□ 1.81
CTCFP49711 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC26.33■■□□□ 1.81
CTCFP49711 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC26.32■■□□□ 1.8
CTCFP49711 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
CTCFP49711 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC26.32■■□□□ 1.8
CTCFP49711 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
CTCFP49711 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
CTCFP49711 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC26.32■■□□□ 1.8
CTCFP49711 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC26.32■■□□□ 1.8
CTCFP49711 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC26.32■■□□□ 1.8
CTCFP49711 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC26.32■■□□□ 1.8
CTCFP49711 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
CTCFP49711 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC26.31■■□□□ 1.8
CTCFP49711 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
CTCFP49711 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC26.31■■□□□ 1.8
CTCFP49711 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC26.31■■□□□ 1.8
CTCFP49711 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
CTCFP49711 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC26.3■■□□□ 1.8
Retrieved 100 of 98,524 protein–RNA pairs in 16.2 ms