Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC19.82■□□□□ 0.76
SOX2P48431 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SOX2P48431 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SOX2P48431 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC19.81■□□□□ 0.76
SOX2P48431 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SOX2P48431 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
SOX2P48431 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SOX2P48431 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC19.81■□□□□ 0.76
SOX2P48431 IDNK-203ENST00000405990 629 ntTSL 2 BASIC19.81■□□□□ 0.76
SOX2P48431 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC19.81■□□□□ 0.76
SOX2P48431 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC19.81■□□□□ 0.76
SOX2P48431 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SOX2P48431 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
SOX2P48431 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SOX2P48431 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
SOX2P48431 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
SOX2P48431 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
SOX2P48431 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SOX2P48431 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SOX2P48431 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC19.8■□□□□ 0.76
SOX2P48431 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SOX2P48431 DUX4L9-201ENST00000449051 1259 ntBASIC19.8■□□□□ 0.76
SOX2P48431 ABHD17AP3-201ENST00000503096 1137 ntBASIC19.8■□□□□ 0.76
SOX2P48431 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SOX2P48431 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SOX2P48431 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SOX2P48431 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC19.79■□□□□ 0.76
SOX2P48431 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SOX2P48431 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC19.79■□□□□ 0.76
SOX2P48431 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
SOX2P48431 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SOX2P48431 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SOX2P48431 GUSBP5-202ENST00000510805 1989 ntBASIC19.79■□□□□ 0.76
SOX2P48431 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
SOX2P48431 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SOX2P48431 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SOX2P48431 HYI-213ENST00000583037 1322 ntTSL 5 BASIC19.78■□□□□ 0.76
SOX2P48431 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC19.78■□□□□ 0.76
SOX2P48431 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SOX2P48431 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC19.78■□□□□ 0.76
SOX2P48431 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
SOX2P48431 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
SOX2P48431 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SOX2P48431 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
SOX2P48431 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
SOX2P48431 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SOX2P48431 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
SOX2P48431 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
SOX2P48431 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SOX2P48431 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
SOX2P48431 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SOX2P48431 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SOX2P48431 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SOX2P48431 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
SOX2P48431 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC19.77■□□□□ 0.76
SOX2P48431 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC19.77■□□□□ 0.76
SOX2P48431 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SOX2P48431 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
SOX2P48431 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
SOX2P48431 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
SOX2P48431 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
SOX2P48431 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.75
SOX2P48431 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC19.76■□□□□ 0.75
SOX2P48431 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SOX2P48431 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SOX2P48431 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
SOX2P48431 COMT-203ENST00000403184 2217 ntTSL 2 BASIC19.76■□□□□ 0.75
SOX2P48431 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC19.76■□□□□ 0.75
SOX2P48431 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
SOX2P48431 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SOX2P48431 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC19.76■□□□□ 0.75
SOX2P48431 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
SOX2P48431 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC19.76■□□□□ 0.75
SOX2P48431 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SOX2P48431 EI24-204ENST00000527235 1625 ntTSL 5 BASIC19.76■□□□□ 0.75
SOX2P48431 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SOX2P48431 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SOX2P48431 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
SOX2P48431 ALDH1A3-203ENST00000557963 1670 ntBASIC19.75■□□□□ 0.75
SOX2P48431 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SOX2P48431 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC19.75■□□□□ 0.75
SOX2P48431 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
SOX2P48431 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
SOX2P48431 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC19.75■□□□□ 0.75
SOX2P48431 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
SOX2P48431 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
SOX2P48431 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC19.75■□□□□ 0.75
SOX2P48431 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SOX2P48431 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC19.74■□□□□ 0.75
SOX2P48431 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
SOX2P48431 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC19.74■□□□□ 0.75
SOX2P48431 AC131274.2-201ENST00000580697 1507 ntBASIC19.74■□□□□ 0.75
SOX2P48431 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SOX2P48431 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
SOX2P48431 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
SOX2P48431 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC19.73■□□□□ 0.75
SOX2P48431 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SOX2P48431 LINC00526-201ENST00000581067 1875 ntBASIC19.73■□□□□ 0.75
SOX2P48431 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
SOX2P48431 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms