Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CDX1P47902 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC18.24■□□□□ 0.51
CDX1P47902 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC18.24■□□□□ 0.51
CDX1P47902 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC18.24■□□□□ 0.51
CDX1P47902 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC18.24■□□□□ 0.51
CDX1P47902 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CDX1P47902 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
CDX1P47902 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC18.24■□□□□ 0.51
CDX1P47902 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CDX1P47902 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
CDX1P47902 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CDX1P47902 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CDX1P47902 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CDX1P47902 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
CDX1P47902 MIR4281-201ENST00000580852 62 ntBASIC18.23■□□□□ 0.51
CDX1P47902 GAK-223ENST00000628912 497 ntTSL 5 BASIC18.23■□□□□ 0.51
CDX1P47902 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CDX1P47902 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CDX1P47902 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CDX1P47902 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CDX1P47902 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC18.22■□□□□ 0.51
CDX1P47902 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CDX1P47902 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CDX1P47902 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CDX1P47902 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
CDX1P47902 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
CDX1P47902 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CDX1P47902 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CDX1P47902 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CDX1P47902 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC18.21■□□□□ 0.51
CDX1P47902 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CDX1P47902 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CDX1P47902 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC18.21■□□□□ 0.51
CDX1P47902 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
CDX1P47902 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC18.21■□□□□ 0.51
CDX1P47902 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
CDX1P47902 MIR4787-201ENST00000607364 84 ntBASIC18.21■□□□□ 0.51
CDX1P47902 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CDX1P47902 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CDX1P47902 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CDX1P47902 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CDX1P47902 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CDX1P47902 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CDX1P47902 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
CDX1P47902 AC021242.3-201ENST00000607598 1377 ntBASIC18.2■□□□□ 0.5
CDX1P47902 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC18.2■□□□□ 0.5
CDX1P47902 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC18.2■□□□□ 0.5
CDX1P47902 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
CDX1P47902 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
CDX1P47902 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC18.2■□□□□ 0.5
CDX1P47902 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
CDX1P47902 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CDX1P47902 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CDX1P47902 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
CDX1P47902 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CDX1P47902 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CDX1P47902 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
CDX1P47902 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC18.19■□□□□ 0.5
CDX1P47902 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CDX1P47902 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
CDX1P47902 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
CDX1P47902 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CDX1P47902 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC18.19■□□□□ 0.5
CDX1P47902 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC18.19■□□□□ 0.5
CDX1P47902 AC007375.3-201ENST00000600936 2314 ntBASIC18.18■□□□□ 0.5
CDX1P47902 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CDX1P47902 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
CDX1P47902 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CDX1P47902 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CDX1P47902 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CDX1P47902 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CDX1P47902 EED-207ENST00000528180 1745 ntTSL 5 BASIC18.18■□□□□ 0.5
CDX1P47902 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC18.18■□□□□ 0.5
CDX1P47902 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CDX1P47902 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CDX1P47902 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC18.18■□□□□ 0.5
CDX1P47902 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC18.18■□□□□ 0.5
CDX1P47902 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC18.18■□□□□ 0.5
CDX1P47902 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CDX1P47902 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CDX1P47902 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CDX1P47902 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CDX1P47902 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC18.18■□□□□ 0.5
CDX1P47902 GALC-202ENST00000393568 2054 ntTSL 2 BASIC18.18■□□□□ 0.5
CDX1P47902 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CDX1P47902 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
CDX1P47902 AC090877.2-201ENST00000558441 1738 ntBASIC18.18■□□□□ 0.5
CDX1P47902 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CDX1P47902 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CDX1P47902 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CDX1P47902 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
CDX1P47902 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CDX1P47902 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CDX1P47902 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC18.17■□□□□ 0.5
CDX1P47902 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC18.17■□□□□ 0.5
CDX1P47902 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC18.17■□□□□ 0.5
CDX1P47902 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CDX1P47902 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
CDX1P47902 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CDX1P47902 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms