Protein–RNA interactions for Protein: P29353

SHC1, SHC-transforming protein 1, humanhuman

Predictions only

Length 583 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHC1P29353 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
SHC1P29353 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC20.63■□□□□ 0.89
SHC1P29353 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SHC1P29353 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SHC1P29353 LSM4-201ENST00000252816 986 ntTSL 2 BASIC20.62■□□□□ 0.89
SHC1P29353 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC20.62■□□□□ 0.89
SHC1P29353 KRT16P3-201ENST00000439127 1283 ntBASIC20.62■□□□□ 0.89
SHC1P29353 AL356441.2-201ENST00000443009 864 ntBASIC20.62■□□□□ 0.89
SHC1P29353 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
SHC1P29353 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SHC1P29353 GRAMD4P7-201ENST00000578182 1232 ntBASIC20.62■□□□□ 0.89
SHC1P29353 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SHC1P29353 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
SHC1P29353 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC20.62■□□□□ 0.89
SHC1P29353 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SHC1P29353 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SHC1P29353 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
SHC1P29353 AL161729.1-201ENST00000604104 1402 ntBASIC20.61■□□□□ 0.89
SHC1P29353 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
SHC1P29353 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
SHC1P29353 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
SHC1P29353 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SHC1P29353 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
SHC1P29353 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC20.61■□□□□ 0.89
SHC1P29353 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC20.61■□□□□ 0.89
SHC1P29353 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC20.61■□□□□ 0.89
SHC1P29353 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SHC1P29353 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
SHC1P29353 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC20.61■□□□□ 0.89
SHC1P29353 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
SHC1P29353 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
SHC1P29353 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC20.6■□□□□ 0.89
SHC1P29353 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SHC1P29353 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SHC1P29353 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
SHC1P29353 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC20.6■□□□□ 0.89
SHC1P29353 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC20.6■□□□□ 0.89
SHC1P29353 MIR6722-201ENST00000617286 78 ntBASIC20.6■□□□□ 0.89
SHC1P29353 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
SHC1P29353 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
SHC1P29353 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
SHC1P29353 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SHC1P29353 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
SHC1P29353 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SHC1P29353 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC20.59■□□□□ 0.89
SHC1P29353 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SHC1P29353 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
SHC1P29353 CD72-202ENST00000378430 585 ntTSL 3 BASIC20.59■□□□□ 0.89
SHC1P29353 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC20.59■□□□□ 0.89
SHC1P29353 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
SHC1P29353 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SHC1P29353 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC20.59■□□□□ 0.89
SHC1P29353 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
SHC1P29353 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
SHC1P29353 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
SHC1P29353 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC20.58■□□□□ 0.89
SHC1P29353 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.89
SHC1P29353 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
SHC1P29353 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC20.58■□□□□ 0.89
SHC1P29353 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
SHC1P29353 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC20.58■□□□□ 0.88
SHC1P29353 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
SHC1P29353 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.88
SHC1P29353 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
SHC1P29353 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC20.58■□□□□ 0.88
SHC1P29353 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SHC1P29353 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
SHC1P29353 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SHC1P29353 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
SHC1P29353 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SHC1P29353 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SHC1P29353 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC20.57■□□□□ 0.88
SHC1P29353 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC20.57■□□□□ 0.88
SHC1P29353 EXOG-217ENST00000630638 197 ntTSL 5 BASIC20.57■□□□□ 0.88
SHC1P29353 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SHC1P29353 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC20.57■□□□□ 0.88
SHC1P29353 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SHC1P29353 EI24-204ENST00000527235 1625 ntTSL 5 BASIC20.56■□□□□ 0.88
SHC1P29353 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SHC1P29353 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC20.56■□□□□ 0.88
SHC1P29353 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SHC1P29353 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
SHC1P29353 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SHC1P29353 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC20.56■□□□□ 0.88
SHC1P29353 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SHC1P29353 ALDH1A3-203ENST00000557963 1670 ntBASIC20.56■□□□□ 0.88
SHC1P29353 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
SHC1P29353 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SHC1P29353 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
SHC1P29353 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SHC1P29353 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC20.56■□□□□ 0.88
SHC1P29353 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SHC1P29353 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SHC1P29353 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC20.56■□□□□ 0.88
SHC1P29353 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
SHC1P29353 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
SHC1P29353 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SHC1P29353 EI24-213ENST00000618552 1747 ntTSL 5 BASIC20.56■□□□□ 0.88
SHC1P29353 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SHC1P29353 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC20.55■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms