Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC24.78■■□□□ 1.56
TPM1P09493 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC24.78■■□□□ 1.56
TPM1P09493 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
TPM1P09493 AC087393.1-201ENST00000582896 145 ntBASIC24.78■■□□□ 1.56
TPM1P09493 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC24.78■■□□□ 1.56
TPM1P09493 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
TPM1P09493 C1orf229-201ENST00000623686 2258 ntBASIC24.78■■□□□ 1.56
TPM1P09493 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC24.77■■□□□ 1.56
TPM1P09493 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC24.77■■□□□ 1.56
TPM1P09493 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
TPM1P09493 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
TPM1P09493 EP400NL-214ENST00000641289 2402 ntBASIC24.77■■□□□ 1.56
TPM1P09493 STK25-234ENST00000535007 2459 ntTSL 2 BASIC24.77■■□□□ 1.56
TPM1P09493 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
TPM1P09493 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC24.77■■□□□ 1.56
TPM1P09493 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
TPM1P09493 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
TPM1P09493 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC24.76■■□□□ 1.55
TPM1P09493 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC24.76■■□□□ 1.55
TPM1P09493 MIR4449-201ENST00000578365 66 ntBASIC24.76■■□□□ 1.55
TPM1P09493 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC24.76■■□□□ 1.55
TPM1P09493 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
TPM1P09493 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC24.76■■□□□ 1.55
TPM1P09493 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC24.76■■□□□ 1.55
TPM1P09493 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
TPM1P09493 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC24.75■■□□□ 1.55
TPM1P09493 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
TPM1P09493 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC24.75■■□□□ 1.55
TPM1P09493 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC24.75■■□□□ 1.55
TPM1P09493 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC24.75■■□□□ 1.55
TPM1P09493 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
TPM1P09493 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC24.75■■□□□ 1.55
TPM1P09493 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC24.75■■□□□ 1.55
TPM1P09493 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC24.75■■□□□ 1.55
TPM1P09493 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
TPM1P09493 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
TPM1P09493 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC24.75■■□□□ 1.55
TPM1P09493 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC24.74■■□□□ 1.55
TPM1P09493 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC24.74■■□□□ 1.55
TPM1P09493 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
TPM1P09493 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC24.74■■□□□ 1.55
TPM1P09493 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC24.74■■□□□ 1.55
TPM1P09493 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC24.74■■□□□ 1.55
TPM1P09493 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC24.74■■□□□ 1.55
TPM1P09493 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
TPM1P09493 IDNK-203ENST00000405990 629 ntTSL 2 BASIC24.74■■□□□ 1.55
TPM1P09493 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC24.74■■□□□ 1.55
TPM1P09493 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
TPM1P09493 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC24.74■■□□□ 1.55
TPM1P09493 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC24.74■■□□□ 1.55
TPM1P09493 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC24.74■■□□□ 1.55
TPM1P09493 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
TPM1P09493 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
TPM1P09493 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
TPM1P09493 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC24.73■■□□□ 1.55
TPM1P09493 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
TPM1P09493 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC24.73■■□□□ 1.55
TPM1P09493 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
TPM1P09493 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
TPM1P09493 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC24.73■■□□□ 1.55
TPM1P09493 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC24.73■■□□□ 1.55
TPM1P09493 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC24.73■■□□□ 1.55
TPM1P09493 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC24.73■■□□□ 1.55
TPM1P09493 MIR6765-201ENST00000614092 87 ntBASIC24.73■■□□□ 1.55
TPM1P09493 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
TPM1P09493 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
TPM1P09493 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC24.73■■□□□ 1.55
TPM1P09493 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC24.73■■□□□ 1.55
TPM1P09493 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC24.72■■□□□ 1.55
TPM1P09493 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC24.72■■□□□ 1.55
TPM1P09493 STK32C-205ENST00000456004 607 ntTSL 2 BASIC24.72■■□□□ 1.55
TPM1P09493 AL592293.1-201ENST00000502889 1188 ntBASIC24.72■■□□□ 1.55
TPM1P09493 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
TPM1P09493 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC24.72■■□□□ 1.55
TPM1P09493 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC24.72■■□□□ 1.55
TPM1P09493 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
TPM1P09493 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC24.72■■□□□ 1.55
TPM1P09493 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
TPM1P09493 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
TPM1P09493 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC24.72■■□□□ 1.55
TPM1P09493 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
TPM1P09493 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
TPM1P09493 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC24.71■■□□□ 1.55
TPM1P09493 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC24.71■■□□□ 1.55
TPM1P09493 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
TPM1P09493 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC24.71■■□□□ 1.55
TPM1P09493 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.55
TPM1P09493 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC24.7■■□□□ 1.54
TPM1P09493 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC24.7■■□□□ 1.54
TPM1P09493 RNF126P1-201ENST00000567452 1320 ntBASIC24.7■■□□□ 1.54
TPM1P09493 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC24.7■■□□□ 1.54
TPM1P09493 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
TPM1P09493 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC24.7■■□□□ 1.54
TPM1P09493 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC24.7■■□□□ 1.54
TPM1P09493 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC24.7■■□□□ 1.54
TPM1P09493 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
TPM1P09493 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC24.69■■□□□ 1.54
TPM1P09493 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
TPM1P09493 GUSBP5-202ENST00000510805 1989 ntBASIC24.69■■□□□ 1.54
TPM1P09493 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC24.69■■□□□ 1.54
Retrieved 100 of 98,524 protein–RNA pairs in 17.3 ms