Protein–RNA interactions for Protein: O43542

XRCC3, DNA repair protein XRCC3, humanhuman

Predictions only

Length 346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC3O43542 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
XRCC3O43542 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
XRCC3O43542 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
XRCC3O43542 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC19.36■□□□□ 0.69
XRCC3O43542 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
XRCC3O43542 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
XRCC3O43542 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC19.36■□□□□ 0.69
XRCC3O43542 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
XRCC3O43542 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC19.35■□□□□ 0.69
XRCC3O43542 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
XRCC3O43542 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
XRCC3O43542 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC19.35■□□□□ 0.69
XRCC3O43542 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
XRCC3O43542 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
XRCC3O43542 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC19.35■□□□□ 0.69
XRCC3O43542 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
XRCC3O43542 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
XRCC3O43542 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
XRCC3O43542 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
XRCC3O43542 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
XRCC3O43542 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC19.34■□□□□ 0.69
XRCC3O43542 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
XRCC3O43542 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC19.34■□□□□ 0.69
XRCC3O43542 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
XRCC3O43542 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
XRCC3O43542 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
XRCC3O43542 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC19.33■□□□□ 0.69
XRCC3O43542 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC19.33■□□□□ 0.69
XRCC3O43542 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC19.33■□□□□ 0.69
XRCC3O43542 MYB-221ENST00000527615 2381 ntTSL 5 BASIC19.33■□□□□ 0.69
XRCC3O43542 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC19.33■□□□□ 0.69
XRCC3O43542 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
XRCC3O43542 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC19.33■□□□□ 0.68
XRCC3O43542 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.68
XRCC3O43542 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
XRCC3O43542 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
XRCC3O43542 AL022069.1-201ENST00000568025 1636 ntBASIC19.33■□□□□ 0.68
XRCC3O43542 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
XRCC3O43542 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
XRCC3O43542 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
XRCC3O43542 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
XRCC3O43542 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
XRCC3O43542 AL024507.2-201ENST00000606070 2574 ntBASIC19.32■□□□□ 0.68
XRCC3O43542 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
XRCC3O43542 TPT1-202ENST00000379055 948 ntTSL 2 BASIC19.32■□□□□ 0.68
XRCC3O43542 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
XRCC3O43542 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC19.32■□□□□ 0.68
XRCC3O43542 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC19.32■□□□□ 0.68
XRCC3O43542 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
XRCC3O43542 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
XRCC3O43542 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
XRCC3O43542 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC19.31■□□□□ 0.68
XRCC3O43542 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
XRCC3O43542 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
XRCC3O43542 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
XRCC3O43542 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
XRCC3O43542 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
XRCC3O43542 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC19.31■□□□□ 0.68
XRCC3O43542 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
XRCC3O43542 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC19.31■□□□□ 0.68
XRCC3O43542 SSSCA1-AS1-201ENST00000567594 614 ntBASIC19.31■□□□□ 0.68
XRCC3O43542 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
XRCC3O43542 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
XRCC3O43542 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
XRCC3O43542 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC19.31■□□□□ 0.68
XRCC3O43542 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
XRCC3O43542 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC19.31■□□□□ 0.68
XRCC3O43542 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
XRCC3O43542 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
XRCC3O43542 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
XRCC3O43542 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC19.3■□□□□ 0.68
XRCC3O43542 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
XRCC3O43542 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
XRCC3O43542 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
XRCC3O43542 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
XRCC3O43542 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC19.3■□□□□ 0.68
XRCC3O43542 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC19.3■□□□□ 0.68
XRCC3O43542 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
XRCC3O43542 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC19.3■□□□□ 0.68
XRCC3O43542 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC19.29■□□□□ 0.68
XRCC3O43542 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
XRCC3O43542 EI24-204ENST00000527235 1625 ntTSL 5 BASIC19.29■□□□□ 0.68
XRCC3O43542 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
XRCC3O43542 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
XRCC3O43542 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
XRCC3O43542 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC19.29■□□□□ 0.68
XRCC3O43542 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
XRCC3O43542 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
XRCC3O43542 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
XRCC3O43542 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
XRCC3O43542 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC19.29■□□□□ 0.68
XRCC3O43542 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC19.29■□□□□ 0.68
XRCC3O43542 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC19.29■□□□□ 0.68
XRCC3O43542 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
XRCC3O43542 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
XRCC3O43542 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
XRCC3O43542 AC022413.1-201ENST00000624602 984 ntBASIC19.28■□□□□ 0.68
XRCC3O43542 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC19.28■□□□□ 0.68
XRCC3O43542 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC19.28■□□□□ 0.68
XRCC3O43542 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 17.9 ms