Protein–RNA interactions for Protein: A0A0B4J266

TRAV41, T-cell receptor alpha variable 41 (Fragment), humanhuman

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV41A0A0B4J266 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TRAV41A0A0B4J266 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC17.76■□□□□ 0.43
TRAV41A0A0B4J266 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TRAV41A0A0B4J266 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TRAV41A0A0B4J266 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TRAV41A0A0B4J266 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC17.76■□□□□ 0.43
TRAV41A0A0B4J266 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
TRAV41A0A0B4J266 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
TRAV41A0A0B4J266 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
TRAV41A0A0B4J266 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
TRAV41A0A0B4J266 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TRAV41A0A0B4J266 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
TRAV41A0A0B4J266 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TRAV41A0A0B4J266 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TRAV41A0A0B4J266 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
TRAV41A0A0B4J266 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
TRAV41A0A0B4J266 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
TRAV41A0A0B4J266 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC17.75■□□□□ 0.43
TRAV41A0A0B4J266 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
TRAV41A0A0B4J266 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC17.75■□□□□ 0.43
TRAV41A0A0B4J266 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC17.75■□□□□ 0.43
TRAV41A0A0B4J266 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC17.75■□□□□ 0.43
TRAV41A0A0B4J266 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
TRAV41A0A0B4J266 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
TRAV41A0A0B4J266 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
TRAV41A0A0B4J266 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
TRAV41A0A0B4J266 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
TRAV41A0A0B4J266 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
TRAV41A0A0B4J266 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
TRAV41A0A0B4J266 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
TRAV41A0A0B4J266 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
TRAV41A0A0B4J266 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC17.75■□□□□ 0.43
TRAV41A0A0B4J266 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
TRAV41A0A0B4J266 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRAV41A0A0B4J266 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC17.74■□□□□ 0.43
TRAV41A0A0B4J266 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRAV41A0A0B4J266 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
TRAV41A0A0B4J266 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRAV41A0A0B4J266 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
TRAV41A0A0B4J266 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRAV41A0A0B4J266 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
TRAV41A0A0B4J266 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC17.74■□□□□ 0.43
TRAV41A0A0B4J266 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
TRAV41A0A0B4J266 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRAV41A0A0B4J266 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
TRAV41A0A0B4J266 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRAV41A0A0B4J266 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC17.74■□□□□ 0.43
TRAV41A0A0B4J266 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRAV41A0A0B4J266 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC17.74■□□□□ 0.43
TRAV41A0A0B4J266 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC17.74■□□□□ 0.43
TRAV41A0A0B4J266 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
TRAV41A0A0B4J266 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
TRAV41A0A0B4J266 AC009102.2-201ENST00000606772 1639 ntBASIC17.73■□□□□ 0.43
TRAV41A0A0B4J266 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
TRAV41A0A0B4J266 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC17.73■□□□□ 0.43
TRAV41A0A0B4J266 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
TRAV41A0A0B4J266 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
TRAV41A0A0B4J266 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC17.73■□□□□ 0.43
TRAV41A0A0B4J266 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
TRAV41A0A0B4J266 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC17.73■□□□□ 0.43
TRAV41A0A0B4J266 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC17.73■□□□□ 0.43
TRAV41A0A0B4J266 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
TRAV41A0A0B4J266 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
TRAV41A0A0B4J266 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC17.72■□□□□ 0.43
TRAV41A0A0B4J266 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TRAV41A0A0B4J266 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
TRAV41A0A0B4J266 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TRAV41A0A0B4J266 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC17.72■□□□□ 0.43
TRAV41A0A0B4J266 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TRAV41A0A0B4J266 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC17.72■□□□□ 0.43
TRAV41A0A0B4J266 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC17.72■□□□□ 0.43
TRAV41A0A0B4J266 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
TRAV41A0A0B4J266 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
TRAV41A0A0B4J266 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
TRAV41A0A0B4J266 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
TRAV41A0A0B4J266 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
TRAV41A0A0B4J266 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
TRAV41A0A0B4J266 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
TRAV41A0A0B4J266 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
TRAV41A0A0B4J266 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC17.71■□□□□ 0.43
TRAV41A0A0B4J266 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
TRAV41A0A0B4J266 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
TRAV41A0A0B4J266 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
TRAV41A0A0B4J266 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
TRAV41A0A0B4J266 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
TRAV41A0A0B4J266 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC17.71■□□□□ 0.42
TRAV41A0A0B4J266 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
TRAV41A0A0B4J266 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC17.7■□□□□ 0.42
TRAV41A0A0B4J266 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC17.7■□□□□ 0.42
TRAV41A0A0B4J266 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TRAV41A0A0B4J266 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
TRAV41A0A0B4J266 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
TRAV41A0A0B4J266 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC17.7■□□□□ 0.42
TRAV41A0A0B4J266 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
TRAV41A0A0B4J266 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
TRAV41A0A0B4J266 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
TRAV41A0A0B4J266 AC131281.2-201ENST00000520478 145 ntBASIC17.7■□□□□ 0.42
TRAV41A0A0B4J266 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
TRAV41A0A0B4J266 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC17.7■□□□□ 0.42
TRAV41A0A0B4J266 THRA-202ENST00000394121 2260 ntTSL 2 BASIC17.7■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 18.4 ms