Protein–RNA interactions for Protein: A0A0B4J238

TRAV1-2, T-cell receptor alpha variable 1-2 (Fragment), humanhuman

Predictions only

Length 106 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-2A0A0B4J238 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
TRAV1-2A0A0B4J238 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC19.7■□□□□ 0.74
TRAV1-2A0A0B4J238 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC19.7■□□□□ 0.74
TRAV1-2A0A0B4J238 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC19.7■□□□□ 0.74
TRAV1-2A0A0B4J238 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
TRAV1-2A0A0B4J238 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
TRAV1-2A0A0B4J238 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC19.7■□□□□ 0.74
TRAV1-2A0A0B4J238 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC19.7■□□□□ 0.74
TRAV1-2A0A0B4J238 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
TRAV1-2A0A0B4J238 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TRAV1-2A0A0B4J238 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
TRAV1-2A0A0B4J238 EI24-204ENST00000527235 1625 ntTSL 5 BASIC19.69■□□□□ 0.74
TRAV1-2A0A0B4J238 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TRAV1-2A0A0B4J238 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC19.69■□□□□ 0.74
TRAV1-2A0A0B4J238 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
TRAV1-2A0A0B4J238 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
TRAV1-2A0A0B4J238 ABHD17AP4-201ENST00000411545 909 ntBASIC19.69■□□□□ 0.74
TRAV1-2A0A0B4J238 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
TRAV1-2A0A0B4J238 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
TRAV1-2A0A0B4J238 AC022413.1-201ENST00000624602 984 ntBASIC19.69■□□□□ 0.74
TRAV1-2A0A0B4J238 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
TRAV1-2A0A0B4J238 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC19.69■□□□□ 0.74
TRAV1-2A0A0B4J238 USP48-205ENST00000421625 2818 ntTSL 2 BASIC19.69■□□□□ 0.74
TRAV1-2A0A0B4J238 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TRAV1-2A0A0B4J238 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TRAV1-2A0A0B4J238 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC19.68■□□□□ 0.74
TRAV1-2A0A0B4J238 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
TRAV1-2A0A0B4J238 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC19.68■□□□□ 0.74
TRAV1-2A0A0B4J238 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TRAV1-2A0A0B4J238 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC19.68■□□□□ 0.74
TRAV1-2A0A0B4J238 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
TRAV1-2A0A0B4J238 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC19.68■□□□□ 0.74
TRAV1-2A0A0B4J238 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC19.68■□□□□ 0.74
TRAV1-2A0A0B4J238 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC19.68■□□□□ 0.74
TRAV1-2A0A0B4J238 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
TRAV1-2A0A0B4J238 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TRAV1-2A0A0B4J238 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
TRAV1-2A0A0B4J238 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TRAV1-2A0A0B4J238 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
TRAV1-2A0A0B4J238 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TRAV1-2A0A0B4J238 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TRAV1-2A0A0B4J238 ALDH1A3-203ENST00000557963 1670 ntBASIC19.67■□□□□ 0.74
TRAV1-2A0A0B4J238 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TRAV1-2A0A0B4J238 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TRAV1-2A0A0B4J238 MYB-221ENST00000527615 2381 ntTSL 5 BASIC19.66■□□□□ 0.74
TRAV1-2A0A0B4J238 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC19.66■□□□□ 0.74
TRAV1-2A0A0B4J238 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TRAV1-2A0A0B4J238 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
TRAV1-2A0A0B4J238 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TRAV1-2A0A0B4J238 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC19.66■□□□□ 0.74
TRAV1-2A0A0B4J238 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC19.66■□□□□ 0.74
TRAV1-2A0A0B4J238 AL592295.1-201ENST00000400984 884 ntBASIC19.66■□□□□ 0.74
TRAV1-2A0A0B4J238 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
TRAV1-2A0A0B4J238 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC19.66■□□□□ 0.74
TRAV1-2A0A0B4J238 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC19.65■□□□□ 0.74
TRAV1-2A0A0B4J238 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
TRAV1-2A0A0B4J238 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC19.65■□□□□ 0.74
TRAV1-2A0A0B4J238 RPS2P7-201ENST00000447334 885 ntBASIC19.65■□□□□ 0.74
TRAV1-2A0A0B4J238 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
TRAV1-2A0A0B4J238 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
TRAV1-2A0A0B4J238 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
TRAV1-2A0A0B4J238 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
TRAV1-2A0A0B4J238 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
TRAV1-2A0A0B4J238 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
TRAV1-2A0A0B4J238 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC19.64■□□□□ 0.74
TRAV1-2A0A0B4J238 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC19.64■□□□□ 0.73
TRAV1-2A0A0B4J238 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
TRAV1-2A0A0B4J238 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
TRAV1-2A0A0B4J238 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
TRAV1-2A0A0B4J238 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC19.63■□□□□ 0.73
TRAV1-2A0A0B4J238 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
TRAV1-2A0A0B4J238 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
TRAV1-2A0A0B4J238 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
TRAV1-2A0A0B4J238 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
TRAV1-2A0A0B4J238 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC19.63■□□□□ 0.73
TRAV1-2A0A0B4J238 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
TRAV1-2A0A0B4J238 HES4-204ENST00000484667 667 ntTSL 3 BASIC19.63■□□□□ 0.73
TRAV1-2A0A0B4J238 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC19.63■□□□□ 0.73
TRAV1-2A0A0B4J238 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TRAV1-2A0A0B4J238 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC19.63■□□□□ 0.73
TRAV1-2A0A0B4J238 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC19.63■□□□□ 0.73
TRAV1-2A0A0B4J238 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
TRAV1-2A0A0B4J238 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TRAV1-2A0A0B4J238 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
TRAV1-2A0A0B4J238 SRP68-213ENST00000629930 165 ntTSL 5 BASIC19.62■□□□□ 0.73
TRAV1-2A0A0B4J238 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
TRAV1-2A0A0B4J238 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC19.62■□□□□ 0.73
TRAV1-2A0A0B4J238 AL024507.2-201ENST00000606070 2574 ntBASIC19.62■□□□□ 0.73
TRAV1-2A0A0B4J238 AC092053.2-201ENST00000640557 1818 ntBASIC19.62■□□□□ 0.73
TRAV1-2A0A0B4J238 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
TRAV1-2A0A0B4J238 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TRAV1-2A0A0B4J238 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TRAV1-2A0A0B4J238 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC19.62■□□□□ 0.73
TRAV1-2A0A0B4J238 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
TRAV1-2A0A0B4J238 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
TRAV1-2A0A0B4J238 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
TRAV1-2A0A0B4J238 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
TRAV1-2A0A0B4J238 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
TRAV1-2A0A0B4J238 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
TRAV1-2A0A0B4J238 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC19.61■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 18.6 ms