Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 SNCAIP-203ENST00000379538 2588 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
DEPDC4Q8N2C3 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
DEPDC4Q8N2C3 ACOX1-201ENST00000293217 7514 ntAPPRIS P5 TSL 1 (best) BASIC13.5□□□□□ -0.25
DEPDC4Q8N2C3 ATP2B2-210ENST00000638646 3465 ntTSL 5 BASIC13.5□□□□□ -0.25
DEPDC4Q8N2C3 PLEKHB2-205ENST00000409279 2488 ntAPPRIS ALT1 TSL 2 BASIC13.5□□□□□ -0.25
DEPDC4Q8N2C3 TBL3-208ENST00000615855 2472 ntTSL 5 BASIC13.5□□□□□ -0.25
DEPDC4Q8N2C3 PPFIA4-203ENST00000367240 6434 ntAPPRIS P5 TSL 5 BASIC13.5□□□□□ -0.25
DEPDC4Q8N2C3 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
DEPDC4Q8N2C3 GTF2I-215ENST00000614986 4415 ntAPPRIS ALT1 TSL 1 (best) BASIC13.5□□□□□ -0.25
DEPDC4Q8N2C3 GTF2I-221ENST00000621734 4412 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
DEPDC4Q8N2C3 GRIK4-202ENST00000438375 4214 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
DEPDC4Q8N2C3 HELLS-202ENST00000348459 3099 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
DEPDC4Q8N2C3 HECTD2-201ENST00000298068 4802 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
DEPDC4Q8N2C3 NHSL1-202ENST00000343505 6535 ntAPPRIS P3 TSL 5 BASIC13.5□□□□□ -0.25
DEPDC4Q8N2C3 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
DEPDC4Q8N2C3 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
DEPDC4Q8N2C3 RNU6-673P-201ENST00000365084 104 ntBASIC13.5□□□□□ -0.25
DEPDC4Q8N2C3 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
DEPDC4Q8N2C3 BOLA2P3-201ENST00000404566 256 ntBASIC13.5□□□□□ -0.25
DEPDC4Q8N2C3 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
DEPDC4Q8N2C3 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
DEPDC4Q8N2C3 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC13.5□□□□□ -0.25
DEPDC4Q8N2C3 AC007969.1-201ENST00000433675 447 ntBASIC13.5□□□□□ -0.25
DEPDC4Q8N2C3 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC13.5□□□□□ -0.25
DEPDC4Q8N2C3 TSPAN5-202ENST00000505184 1191 ntTSL 2 BASIC13.5□□□□□ -0.25
DEPDC4Q8N2C3 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC13.5□□□□□ -0.25
DEPDC4Q8N2C3 HNRNPA1P13-201ENST00000510646 963 ntBASIC13.5□□□□□ -0.25
DEPDC4Q8N2C3 SLC6A12-207ENST00000536824 2101 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
DEPDC4Q8N2C3 KRT17P8-201ENST00000540749 863 ntBASIC13.5□□□□□ -0.25
DEPDC4Q8N2C3 PTP4A1P2-201ENST00000546033 454 ntBASIC13.5□□□□□ -0.25
DEPDC4Q8N2C3 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC13.5□□□□□ -0.25
DEPDC4Q8N2C3 APRT-204ENST00000563655 709 ntTSL 5 BASIC13.5□□□□□ -0.25
DEPDC4Q8N2C3 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
DEPDC4Q8N2C3 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC13.5□□□□□ -0.25
DEPDC4Q8N2C3 AC009486.1-201ENST00000569860 813 ntBASIC13.5□□□□□ -0.25
DEPDC4Q8N2C3 PAM16-204ENST00000571941 674 ntTSL 3 BASIC13.5□□□□□ -0.25
DEPDC4Q8N2C3 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC13.5□□□□□ -0.25
DEPDC4Q8N2C3 APOC4-201ENST00000591600 348 ntTSL 3 BASIC13.5□□□□□ -0.25
DEPDC4Q8N2C3 AC135178.5-201ENST00000602597 674 ntBASIC13.5□□□□□ -0.25
DEPDC4Q8N2C3 AL391069.4-201ENST00000609583 481 ntBASIC13.5□□□□□ -0.25
DEPDC4Q8N2C3 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC13.5□□□□□ -0.25
DEPDC4Q8N2C3 AC009118.3-201ENST00000622896 873 ntBASIC13.5□□□□□ -0.25
DEPDC4Q8N2C3 HIC2-203ENST00000443632 6940 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
DEPDC4Q8N2C3 MKL1-201ENST00000355630 4496 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
DEPDC4Q8N2C3 GPR84-202ENST00000551809 2041 ntAPPRIS P1 BASIC13.5□□□□□ -0.25
DEPDC4Q8N2C3 STAT4-202ENST00000392320 2822 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
DEPDC4Q8N2C3 EXOC6B-201ENST00000272427 5918 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
DEPDC4Q8N2C3 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
DEPDC4Q8N2C3 TDRD5-201ENST00000294848 3525 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
DEPDC4Q8N2C3 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
DEPDC4Q8N2C3 SEZ6L-206ENST00000404234 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
DEPDC4Q8N2C3 PRKAB1-201ENST00000229328 2610 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
DEPDC4Q8N2C3 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC13.5□□□□□ -0.25
DEPDC4Q8N2C3 ZNF785-201ENST00000395216 3282 ntAPPRIS P2 TSL 1 (best) BASIC13.5□□□□□ -0.25
DEPDC4Q8N2C3 UBE2D3-210ENST00000453744 3990 ntAPPRIS ALT1 TSL 1 (best) BASIC13.5□□□□□ -0.25
DEPDC4Q8N2C3 SUV39H2-201ENST00000313519 3087 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
DEPDC4Q8N2C3 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC13.5□□□□□ -0.25
DEPDC4Q8N2C3 AL138799.1-201ENST00000448213 1675 ntBASIC13.5□□□□□ -0.25
DEPDC4Q8N2C3 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
DEPDC4Q8N2C3 C11orf21-201ENST00000381153 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
DEPDC4Q8N2C3 FAM200B-201ENST00000422728 2962 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
DEPDC4Q8N2C3 TMEM260-201ENST00000261556 4264 ntAPPRIS P1 TSL 2 BASIC13.5□□□□□ -0.25
DEPDC4Q8N2C3 JADE1-209ENST00000511647 3560 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
DEPDC4Q8N2C3 AC015688.4-201ENST00000580780 1647 ntBASIC13.5□□□□□ -0.25
DEPDC4Q8N2C3 C9orf47-203ENST00000375851 4837 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
DEPDC4Q8N2C3 AL356258.1-201ENST00000605929 2246 ntTSL 2 BASIC13.49□□□□□ -0.25
DEPDC4Q8N2C3 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC13.49□□□□□ -0.25
DEPDC4Q8N2C3 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
DEPDC4Q8N2C3 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
DEPDC4Q8N2C3 RRAGD-201ENST00000359203 4042 ntTSL 2 BASIC13.49□□□□□ -0.25
DEPDC4Q8N2C3 RBM6-211ENST00000443081 4010 ntTSL 5 BASIC13.49□□□□□ -0.25
DEPDC4Q8N2C3 FOXM1-203ENST00000361953 3370 ntAPPRIS ALT1 TSL 1 (best) BASIC13.49□□□□□ -0.25
DEPDC4Q8N2C3 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
DEPDC4Q8N2C3 CENPBD1-201ENST00000314994 2744 ntAPPRIS P1 BASIC13.49□□□□□ -0.25
DEPDC4Q8N2C3 UGP2-207ENST00000467648 2057 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
DEPDC4Q8N2C3 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
DEPDC4Q8N2C3 ALOX15B-201ENST00000380173 2605 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
DEPDC4Q8N2C3 HNRNPA1P48-201ENST00000562726 1377 ntBASIC13.49□□□□□ -0.25
DEPDC4Q8N2C3 PI4KA-201ENST00000255882 6752 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
DEPDC4Q8N2C3 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC13.49□□□□□ -0.25
DEPDC4Q8N2C3 TTK-201ENST00000230510 3477 ntAPPRIS ALT2 TSL 2 BASIC13.49□□□□□ -0.25
DEPDC4Q8N2C3 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
DEPDC4Q8N2C3 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC13.49□□□□□ -0.25
DEPDC4Q8N2C3 MRPL37P1-201ENST00000592451 1337 ntBASIC13.49□□□□□ -0.25
DEPDC4Q8N2C3 AC025594.2-201ENST00000609480 3902 ntAPPRIS P1 TSL 3 BASIC13.49□□□□□ -0.25
DEPDC4Q8N2C3 POTEM-201ENST00000547889 1817 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
DEPDC4Q8N2C3 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC13.49□□□□□ -0.25
DEPDC4Q8N2C3 ADCYAP1R1-201ENST00000304166 6487 ntAPPRIS P3 TSL 2 BASIC13.49□□□□□ -0.25
DEPDC4Q8N2C3 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
DEPDC4Q8N2C3 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC13.49□□□□□ -0.25
DEPDC4Q8N2C3 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
DEPDC4Q8N2C3 OTUD4-201ENST00000447906 3829 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
DEPDC4Q8N2C3 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
DEPDC4Q8N2C3 IGHV3-71-201ENST00000523324 359 ntBASIC13.49□□□□□ -0.25
DEPDC4Q8N2C3 FUZ-207ENST00000526575 482 ntTSL 4 BASIC13.49□□□□□ -0.25
DEPDC4Q8N2C3 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC13.49□□□□□ -0.25
DEPDC4Q8N2C3 TDH-203ENST00000531764 1110 ntBASIC13.49□□□□□ -0.25
DEPDC4Q8N2C3 AC073569.1-201ENST00000548469 667 ntTSL 2 BASIC13.49□□□□□ -0.25
DEPDC4Q8N2C3 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC13.49□□□□□ -0.25
DEPDC4Q8N2C3 AL359711.2-201ENST00000563105 872 ntBASIC13.49□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 63.9 ms