Protein–RNA interactions for Protein: P55283

CDH4, Cadherin-4, humanhuman

Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH4P55283 SYBU-206ENST00000424158 3007 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
CDH4P55283 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC14.6□□□□□ -0.07
CDH4P55283 PRKAG2-215ENST00000492843 2699 ntTSL 5 BASIC14.6□□□□□ -0.07
CDH4P55283 RTFDC1-203ENST00000395881 1572 ntTSL 2 BASIC14.6□□□□□ -0.07
CDH4P55283 SMARCE1-205ENST00000431889 1569 ntTSL 2 BASIC14.6□□□□□ -0.07
CDH4P55283 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CDH4P55283 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CDH4P55283 PISD-209ENST00000439502 1963 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
CDH4P55283 RADIL-201ENST00000399583 3689 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
CDH4P55283 FOXD4L5-201ENST00000377420 3109 ntAPPRIS P1 BASIC14.6□□□□□ -0.07
CDH4P55283 MRM2-201ENST00000242257 1601 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CDH4P55283 ILDR1-205ENST00000462014 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
CDH4P55283 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CDH4P55283 AKNA-206ENST00000374088 5464 ntAPPRIS P2 TSL 2 BASIC14.6□□□□□ -0.07
CDH4P55283 TRIT1-214ENST00000537440 2026 ntTSL 5 BASIC14.6□□□□□ -0.07
CDH4P55283 ZNF251-201ENST00000292562 2807 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
CDH4P55283 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
CDH4P55283 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC14.6□□□□□ -0.07
CDH4P55283 COMMD4-201ENST00000267935 1067 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CDH4P55283 U2AF1L4-201ENST00000292879 729 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
CDH4P55283 SLC25A26-201ENST00000336733 1023 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
CDH4P55283 COMMD4-202ENST00000338995 722 ntTSL 2 BASIC14.6□□□□□ -0.07
CDH4P55283 MIR557-201ENST00000385239 98 ntBASIC14.6□□□□□ -0.07
CDH4P55283 IGHV3-48-201ENST00000390624 432 ntAPPRIS P1 BASIC14.6□□□□□ -0.07
CDH4P55283 AL583805.1-201ENST00000391389 531 ntBASIC14.6□□□□□ -0.07
CDH4P55283 RPL3-202ENST00000401609 1289 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
CDH4P55283 HLA-DQB2-229ENST00000411527 1059 ntBASIC14.6□□□□□ -0.07
CDH4P55283 Z82188.2-201ENST00000419128 630 ntTSL 5 BASIC14.6□□□□□ -0.07
CDH4P55283 MIR4435-2HG-204ENST00000419736 777 ntTSL 3 BASIC14.6□□□□□ -0.07
CDH4P55283 HCFC1-AS1-201ENST00000438219 350 ntTSL 3 BASIC14.6□□□□□ -0.07
CDH4P55283 DCTD-213ENST00000510370 794 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
CDH4P55283 NDRG1-209ENST00000518176 888 ntTSL 2 BASIC14.6□□□□□ -0.07
CDH4P55283 PPCDC-205ENST00000563393 1149 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
CDH4P55283 COMMD4-211ENST00000564815 639 ntTSL 3 BASIC14.6□□□□□ -0.07
CDH4P55283 PPCDC-208ENST00000567336 892 ntTSL 5 BASIC14.6□□□□□ -0.07
CDH4P55283 MIR3907-201ENST00000579424 151 ntBASIC14.6□□□□□ -0.07
CDH4P55283 FXYD6-FXYD2-202ENST00000614497 634 ntAPPRIS P1 TSL 3 BASIC14.6□□□□□ -0.07
CDH4P55283 ANXA8L1-206ENST00000619162 1109 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CDH4P55283 KRTAP10-4-203ENST00000622352 1244 ntAPPRIS ALT2 TSL 5 BASIC14.6□□□□□ -0.07
CDH4P55283 ATAT1-206ENST00000376485 1476 ntAPPRIS ALT1 TSL 5 BASIC14.6□□□□□ -0.07
CDH4P55283 RHD-209ENST00000568195 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
CDH4P55283 PDE4C-204ENST00000539010 1699 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
CDH4P55283 TBC1D3-201ENST00000620215 2063 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CDH4P55283 TBC1D3C-201ENST00000622206 2063 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CDH4P55283 IQCE-216ENST00000611775 2289 ntAPPRIS ALT2 TSL 2 BASIC14.6□□□□□ -0.07
CDH4P55283 WDSUB1-201ENST00000358147 1535 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
CDH4P55283 RAD23A-209ENST00000592268 1526 ntTSL 5 BASIC14.6□□□□□ -0.07
CDH4P55283 ETV4-202ENST00000393664 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CDH4P55283 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC14.6□□□□□ -0.07
CDH4P55283 PAPSS2-202ENST00000456849 3856 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
CDH4P55283 CAP2P1-201ENST00000557743 1390 ntBASIC14.6□□□□□ -0.07
CDH4P55283 KIF7-201ENST00000394412 4551 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
CDH4P55283 BAIAP3-202ENST00000397488 4583 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CDH4P55283 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC14.59□□□□□ -0.07
CDH4P55283 SC5D-202ENST00000392789 2258 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CDH4P55283 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
CDH4P55283 AFAP1-204ENST00000420658 7768 ntAPPRIS ALT1 TSL 2 BASIC14.59□□□□□ -0.07
CDH4P55283 ANKRD42-201ENST00000260047 2514 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CDH4P55283 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC14.59□□□□□ -0.07
CDH4P55283 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC14.59□□□□□ -0.07
CDH4P55283 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC14.59□□□□□ -0.07
CDH4P55283 GGACT-201ENST00000376250 2804 ntAPPRIS P1 TSL 3 BASIC14.59□□□□□ -0.07
CDH4P55283 RASGEF1C-202ENST00000393371 2395 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CDH4P55283 TIGD1-201ENST00000408957 2625 ntAPPRIS P1 BASIC14.59□□□□□ -0.07
CDH4P55283 POLD4-201ENST00000312419 918 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CDH4P55283 COX14-201ENST00000317943 708 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
CDH4P55283 RPP40-201ENST00000319533 1088 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CDH4P55283 DEFB123-201ENST00000376309 467 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CDH4P55283 AC012506.3-201ENST00000415245 892 ntTSL 3 BASIC14.59□□□□□ -0.07
CDH4P55283 Z82214.1-201ENST00000419643 988 ntTSL 3 BASIC14.59□□□□□ -0.07
CDH4P55283 RPL8P2-201ENST00000430538 502 ntBASIC14.59□□□□□ -0.07
CDH4P55283 AL590617.2-201ENST00000432673 917 ntTSL 3 BASIC14.59□□□□□ -0.07
CDH4P55283 RPS27L-203ENST00000439025 970 ntTSL 2 BASIC14.59□□□□□ -0.07
CDH4P55283 CCDC18-AS1-219ENST00000451302 1212 ntTSL 3 BASIC14.59□□□□□ -0.07
CDH4P55283 AC074194.1-201ENST00000505025 622 ntTSL 4 BASIC14.59□□□□□ -0.07
CDH4P55283 IGLV3-15-201ENST00000518356 244 ntBASIC14.59□□□□□ -0.07
CDH4P55283 TMEM14C-205ENST00000541412 1177 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
CDH4P55283 MESP2-203ENST00000560219 859 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CDH4P55283 AC016044.1-201ENST00000560818 572 ntTSL 4 BASIC14.59□□□□□ -0.07
CDH4P55283 AC068152.1-201ENST00000575930 685 ntTSL 5 BASIC14.59□□□□□ -0.07
CDH4P55283 SNHG25-202ENST00000582965 278 ntTSL 2 BASIC14.59□□□□□ -0.07
CDH4P55283 TMEM205-210ENST00000588560 840 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
CDH4P55283 POLRMT-202ENST00000588649 3835 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CDH4P55283 AL133499.1-201ENST00000596207 608 ntBASIC14.59□□□□□ -0.07
CDH4P55283 SIGLEC18P-201ENST00000602271 909 ntBASIC14.59□□□□□ -0.07
CDH4P55283 CUTA-215ENST00000611509 1199 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
CDH4P55283 BAP1-211ENST00000615113 489 ntBASIC14.59□□□□□ -0.07
CDH4P55283 AC068587.10-201ENST00000641210 219 ntBASIC14.59□□□□□ -0.07
CDH4P55283 CPNE2-204ENST00000565874 1976 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CDH4P55283 HS6ST3-201ENST00000376705 7804 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CDH4P55283 PCGF2-203ENST00000616129 1534 ntTSL 5 BASIC14.59□□□□□ -0.07
CDH4P55283 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CDH4P55283 GPAT4-201ENST00000396987 6298 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CDH4P55283 POU2F2-204ENST00000526816 3218 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
CDH4P55283 TGOLN2-204ENST00000409015 2276 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
CDH4P55283 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CDH4P55283 SLC6A20-202ENST00000358525 5423 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CDH4P55283 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CDH4P55283 SLC22A15-202ENST00000369503 4720 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CDH4P55283 FBXO41-201ENST00000295133 6928 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 49.2 ms