Protein–RNA interactions for Protein: P52948

NUP98, Nuclear pore complex protein Nup98-Nup96, humanhuman

Predictions only

Length 1,817 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98P52948 HNRNPA1P5-201ENST00000558213 966 ntBASIC17.31■□□□□ 0.36
NUP98P52948 AC006547.3-201ENST00000600090 583 ntTSL 3 BASIC17.31■□□□□ 0.36
NUP98P52948 C1orf87-202ENST00000450089 1307 ntTSL 5 BASIC17.3■□□□□ 0.36
NUP98P52948 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
NUP98P52948 FCRL6-202ENST00000339348 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
NUP98P52948 BCCIP-203ENST00000368759 1433 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
NUP98P52948 AF013593.1-201ENST00000458074 1487 ntBASIC17.3■□□□□ 0.36
NUP98P52948 HS1BP3-201ENST00000304031 2370 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
NUP98P52948 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC17.3■□□□□ 0.36
NUP98P52948 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
NUP98P52948 FOXF1-201ENST00000262426 3516 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
NUP98P52948 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
NUP98P52948 APBB1-203ENST00000389906 2684 ntAPPRIS ALT1 TSL 5 BASIC17.3■□□□□ 0.36
NUP98P52948 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
NUP98P52948 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
NUP98P52948 XRCC6-202ENST00000360079 2296 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
NUP98P52948 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
NUP98P52948 HIGD2A-201ENST00000274787 668 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
NUP98P52948 S100A13-203ENST00000392623 579 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
NUP98P52948 AC092570.1-201ENST00000414446 469 ntBASIC17.3■□□□□ 0.36
NUP98P52948 AL356417.1-201ENST00000421161 845 ntTSL 3 BASIC17.3■□□□□ 0.36
NUP98P52948 AC041040.1-201ENST00000425197 460 ntBASIC17.3■□□□□ 0.36
NUP98P52948 AC099548.2-201ENST00000491047 571 ntTSL 4 BASIC17.3■□□□□ 0.36
NUP98P52948 AC078852.1-201ENST00000515842 441 ntTSL 3 BASIC17.3■□□□□ 0.36
NUP98P52948 AC078814.4-201ENST00000546650 327 ntBASIC17.3■□□□□ 0.36
NUP98P52948 SLC25A3-215ENST00000551265 580 ntTSL 4 BASIC17.3■□□□□ 0.36
NUP98P52948 IFI27L1-211ENST00000557066 580 ntTSL 3 BASIC17.3■□□□□ 0.36
NUP98P52948 MIR5001-201ENST00000580185 100 ntBASIC17.3■□□□□ 0.36
NUP98P52948 AC139713.2-207ENST00000641556 1292 ntBASIC17.3■□□□□ 0.36
NUP98P52948 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
NUP98P52948 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
NUP98P52948 AC020931.1-201ENST00000589622 1346 ntBASIC17.3■□□□□ 0.36
NUP98P52948 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
NUP98P52948 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
NUP98P52948 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
NUP98P52948 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
NUP98P52948 AC061965.1-201ENST00000560524 1465 ntBASIC17.3■□□□□ 0.36
NUP98P52948 MKRN2-203ENST00000448482 1679 ntTSL 5 BASIC17.29■□□□□ 0.36
NUP98P52948 KCTD6-205ENST00000490264 1759 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
NUP98P52948 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
NUP98P52948 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
NUP98P52948 CWC27-201ENST00000381070 2078 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
NUP98P52948 OPN1SW-201ENST00000249389 1096 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
NUP98P52948 SNORA57-201ENST00000383870 149 ntBASIC17.29■□□□□ 0.36
NUP98P52948 SOD2-205ENST00000444946 917 ntTSL 2 BASIC17.29■□□□□ 0.36
NUP98P52948 AC073094.1-201ENST00000453798 433 ntTSL 2 BASIC17.29■□□□□ 0.36
NUP98P52948 TAGLN3-203ENST00000455401 1164 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
NUP98P52948 UBE2D3-221ENST00000507845 577 ntTSL 4 BASIC17.29■□□□□ 0.36
NUP98P52948 LINC01996-201ENST00000573270 1273 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
NUP98P52948 RN7SL134P-201ENST00000579756 303 ntBASIC17.29■□□□□ 0.36
NUP98P52948 NAV1-210ENST00000593583 726 ntBASIC17.29■□□□□ 0.36
NUP98P52948 HTR3D-201ENST00000334128 1459 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
NUP98P52948 HSPA1L-201ENST00000375654 2544 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
NUP98P52948 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
NUP98P52948 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
NUP98P52948 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
NUP98P52948 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC17.29■□□□□ 0.36
NUP98P52948 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC17.29■□□□□ 0.36
NUP98P52948 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC17.29■□□□□ 0.36
NUP98P52948 FMC1-201ENST00000297534 1210 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
NUP98P52948 AL157823.1-201ENST00000403727 628 ntBASIC17.28■□□□□ 0.36
NUP98P52948 IGLV9-49-201ENST00000427632 409 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
NUP98P52948 BX248123.1-201ENST00000429070 606 ntTSL 3 BASIC17.28■□□□□ 0.36
NUP98P52948 RPL15-208ENST00000435882 1063 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
NUP98P52948 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
NUP98P52948 TUBA1B-202ENST00000336023 1627 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
NUP98P52948 AAAS-202ENST00000394384 1703 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
NUP98P52948 AL356753.1-201ENST00000427035 2018 ntTSL 2 BASIC17.28■□□□□ 0.36
NUP98P52948 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
NUP98P52948 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
NUP98P52948 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
NUP98P52948 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC17.28■□□□□ 0.36
NUP98P52948 PARP3-203ENST00000431474 2360 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
NUP98P52948 AL928654.5-201ENST00000624831 2501 ntBASIC17.28■□□□□ 0.36
NUP98P52948 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
NUP98P52948 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC17.28■□□□□ 0.36
NUP98P52948 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
NUP98P52948 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
NUP98P52948 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
NUP98P52948 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
NUP98P52948 RADIL-201ENST00000399583 3689 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
NUP98P52948 COASY-202ENST00000421097 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
NUP98P52948 LIMS2-206ENST00000409754 1620 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
NUP98P52948 LGALS4-201ENST00000307751 1535 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
NUP98P52948 KRT37-201ENST00000225550 1475 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
NUP98P52948 CR382285.1-201ENST00000625012 1485 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
NUP98P52948 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
NUP98P52948 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
NUP98P52948 DAD1-201ENST00000250498 731 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
NUP98P52948 DHRS7C-201ENST00000330255 1006 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
NUP98P52948 UROS-201ENST00000368774 744 ntTSL 2 BASIC17.28■□□□□ 0.36
NUP98P52948 C6orf48-202ENST00000375635 610 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
NUP98P52948 KLK11-203ENST00000391804 930 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
NUP98P52948 C6orf48-209ENST00000395789 952 ntAPPRIS P1 TSL 3 BASIC17.28■□□□□ 0.36
NUP98P52948 SNORA50C-201ENST00000408535 133 ntBASIC17.28■□□□□ 0.36
NUP98P52948 AL158207.2-201ENST00000414926 266 ntTSL 5 BASIC17.28■□□□□ 0.36
NUP98P52948 PHBP10-201ENST00000416467 784 ntBASIC17.28■□□□□ 0.36
NUP98P52948 AC093700.1-201ENST00000503348 717 ntBASIC17.28■□□□□ 0.36
NUP98P52948 HNRNPA1P56-201ENST00000505767 954 ntBASIC17.28■□□□□ 0.36
NUP98P52948 AC026470.4-201ENST00000565812 308 ntTSL 3 BASIC17.28■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 54 ms