Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.29
RFC3P40938 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC13.21□□□□□ -0.29
RFC3P40938 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC13.21□□□□□ -0.29
RFC3P40938 TAB1-201ENST00000216160 3237 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
RFC3P40938 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC13.21□□□□□ -0.3
RFC3P40938 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC13.21□□□□□ -0.3
RFC3P40938 COCH-203ENST00000460581 2688 ntTSL 2 BASIC13.21□□□□□ -0.3
RFC3P40938 GRID2IP-203ENST00000457091 3636 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.3
RFC3P40938 DDX21-202ENST00000620315 4829 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
RFC3P40938 PPM1A-203ENST00000395076 8184 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
RFC3P40938 BCL11B-201ENST00000345514 7603 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.3
RFC3P40938 ZBED1-203ENST00000381223 4510 ntAPPRIS P1 TSL 2 BASIC13.21□□□□□ -0.3
RFC3P40938 SVOPL-201ENST00000288513 1413 ntTSL 2 BASIC13.21□□□□□ -0.3
RFC3P40938 VWCE-205ENST00000535710 1437 ntTSL 2 BASIC13.21□□□□□ -0.3
RFC3P40938 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC13.21□□□□□ -0.3
RFC3P40938 FAM84B-201ENST00000304916 5404 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
RFC3P40938 PHTF1-204ENST00000369604 3273 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.3
RFC3P40938 GTPBP1-201ENST00000216044 5126 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
RFC3P40938 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
RFC3P40938 KDM2B-205ENST00000536437 2762 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
RFC3P40938 PEX26-205ENST00000610387 3924 ntTSL 5 BASIC13.2□□□□□ -0.3
RFC3P40938 AP3M2-201ENST00000174653 3661 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
RFC3P40938 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
RFC3P40938 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
RFC3P40938 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
RFC3P40938 THUMPD3-AS1-212ENST00000520447 1809 ntTSL 5 BASIC13.2□□□□□ -0.3
RFC3P40938 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
RFC3P40938 DEF8-219ENST00000567874 1554 ntTSL 2 BASIC13.2□□□□□ -0.3
RFC3P40938 NCBP2-206ENST00000447325 2216 ntTSL 2 BASIC13.2□□□□□ -0.3
RFC3P40938 TMPRSS9-201ENST00000332578 3331 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
RFC3P40938 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC13.2□□□□□ -0.3
RFC3P40938 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
RFC3P40938 AC013472.1-203ENST00000380387 1966 ntTSL 4 BASIC13.2□□□□□ -0.3
RFC3P40938 PCDH10-203ENST00000618019 4574 ntAPPRIS ALT2 BASIC13.2□□□□□ -0.3
RFC3P40938 PRDM16-203ENST00000378391 5447 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
RFC3P40938 DUS2-201ENST00000358896 1933 ntAPPRIS P1 TSL 2 BASIC13.2□□□□□ -0.3
RFC3P40938 C6orf52-201ENST00000259983 619 ntAPPRIS P2 TSL 5 BASIC13.2□□□□□ -0.3
RFC3P40938 AC211486.1-201ENST00000275590 980 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
RFC3P40938 RPS9-201ENST00000302907 829 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
RFC3P40938 CRB3-201ENST00000308243 631 ntAPPRIS ALT2 TSL 2 BASIC13.2□□□□□ -0.3
RFC3P40938 NUDT1-203ENST00000356714 662 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
RFC3P40938 RNA5SP359-201ENST00000364838 113 ntBASIC13.2□□□□□ -0.3
RFC3P40938 GNRH2-204ENST00000380347 758 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
RFC3P40938 NUDT1-204ENST00000397046 712 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
RFC3P40938 LINC00313-205ENST00000427188 967 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
RFC3P40938 TSPY25P-201ENST00000429463 745 ntBASIC13.2□□□□□ -0.3
RFC3P40938 LINC01088-201ENST00000437737 973 ntTSL 5 BASIC13.2□□□□□ -0.3
RFC3P40938 AP000356.1-201ENST00000438893 364 ntTSL 3 BASIC13.2□□□□□ -0.3
RFC3P40938 AC009403.1-204ENST00000469539 597 ntTSL 2 BASIC13.2□□□□□ -0.3
RFC3P40938 TAPBP-241ENST00000489157 1299 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
RFC3P40938 UPK1B-205ENST00000497685 981 ntTSL 2 BASIC13.2□□□□□ -0.3
RFC3P40938 AC008723.1-201ENST00000506922 207 ntBASIC13.2□□□□□ -0.3
RFC3P40938 CFL1-214ENST00000534769 758 ntTSL 2 BASIC13.2□□□□□ -0.3
RFC3P40938 PGAM1P5-201ENST00000548011 764 ntBASIC13.2□□□□□ -0.3
RFC3P40938 AL356756.1-201ENST00000550941 551 ntTSL 3 BASIC13.2□□□□□ -0.3
RFC3P40938 C19orf25-205ENST00000588427 853 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
RFC3P40938 ALKBH7-202ENST00000596657 603 ntTSL 2 BASIC13.2□□□□□ -0.3
RFC3P40938 Metazoa_SRP.65-201ENST00000615602 264 ntBASIC13.2□□□□□ -0.3
RFC3P40938 MIR6769A-201ENST00000617340 73 ntBASIC13.2□□□□□ -0.3
RFC3P40938 RETN-203ENST00000629642 400 ntTSL 5 BASIC13.2□□□□□ -0.3
RFC3P40938 AC006453.1-201ENST00000636037 1257 ntBASIC13.2□□□□□ -0.3
RFC3P40938 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC13.2□□□□□ -0.3
RFC3P40938 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
RFC3P40938 PRKN-204ENST00000366896 2514 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
RFC3P40938 ZNF663P-201ENST00000400371 2722 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
RFC3P40938 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
RFC3P40938 PLAG1-203ENST00000429357 1899 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
RFC3P40938 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC13.2□□□□□ -0.3
RFC3P40938 ACAN-209ENST00000617301 8669 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
RFC3P40938 CDH23-201ENST00000224721 11139 ntAPPRIS P5 TSL 5 BASIC13.2□□□□□ -0.3
RFC3P40938 CDH23-214ENST00000622827 11122 ntAPPRIS ALT1 TSL 5 BASIC13.2□□□□□ -0.3
RFC3P40938 PDE8B-205ENST00000346042 3276 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
RFC3P40938 MRGPRX4-201ENST00000314254 1444 ntAPPRIS P1 BASIC13.2□□□□□ -0.3
RFC3P40938 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
RFC3P40938 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC13.2□□□□□ -0.3
RFC3P40938 AC126335.2-201ENST00000623362 4637 ntBASIC13.2□□□□□ -0.3
RFC3P40938 RSBN1-201ENST00000261441 6621 ntAPPRIS P1 TSL 2 BASIC13.2□□□□□ -0.3
RFC3P40938 GNAO1-202ENST00000262494 5767 ntAPPRIS ALT1 TSL 1 (best) BASIC13.2□□□□□ -0.3
RFC3P40938 IMPACT-201ENST00000284202 3792 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
RFC3P40938 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
RFC3P40938 AL354702.1-201ENST00000442006 1960 ntBASIC13.2□□□□□ -0.3
RFC3P40938 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
RFC3P40938 G6PD-201ENST00000369620 1799 ntTSL 5 BASIC13.2□□□□□ -0.3
RFC3P40938 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
RFC3P40938 FBXL21-202ENST00000467490 1742 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
RFC3P40938 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
RFC3P40938 ERC1-219ENST00000546231 4390 ntTSL 5 BASIC13.19□□□□□ -0.3
RFC3P40938 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC13.19□□□□□ -0.3
RFC3P40938 AC104452.1-203ENST00000636166 2266 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
RFC3P40938 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
RFC3P40938 AC097374.1-201ENST00000568768 6624 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
RFC3P40938 PPP5D1-201ENST00000414155 1882 ntAPPRIS P5 TSL 2 BASIC13.19□□□□□ -0.3
RFC3P40938 ZNF655-212ENST00000424881 4666 ntAPPRIS ALT2 TSL 2 BASIC13.19□□□□□ -0.3
RFC3P40938 POLM-202ENST00000335195 2444 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
RFC3P40938 IRAK4-212ENST00000551736 1684 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
RFC3P40938 HIPK3-201ENST00000303296 7408 ntTSL 5 BASIC13.19□□□□□ -0.3
RFC3P40938 TSPAN12-201ENST00000222747 2798 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
RFC3P40938 EPAS1-201ENST00000263734 5166 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
RFC3P40938 PWWP2A-201ENST00000307063 3346 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
RFC3P40938 FAH-201ENST00000261755 1471 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 50.4 ms