Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC11.15□□□□□ -0.62
CXCL1P09341 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC11.15□□□□□ -0.62
CXCL1P09341 SOX30-201ENST00000265007 3265 ntAPPRIS P4 TSL 1 (best) BASIC11.15□□□□□ -0.62
CXCL1P09341 C14orf159-219ENST00000521077 2719 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
CXCL1P09341 LRRC8C-201ENST00000370454 7218 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
CXCL1P09341 ABCD1P2-201ENST00000429313 1601 ntBASIC11.15□□□□□ -0.62
CXCL1P09341 PRELP-201ENST00000343110 5747 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
CXCL1P09341 KIAA1217-203ENST00000376452 6052 ntAPPRIS ALT2 TSL 1 (best) BASIC11.15□□□□□ -0.62
CXCL1P09341 KRT8P14-201ENST00000414254 1442 ntBASIC11.15□□□□□ -0.62
CXCL1P09341 BORCS8-202ENST00000462790 1429 ntAPPRIS P3 TSL 1 (best) BASIC11.15□□□□□ -0.62
CXCL1P09341 MDGA1-207ENST00000505425 3021 ntTSL 5 BASIC11.15□□□□□ -0.62
CXCL1P09341 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC11.15□□□□□ -0.62
CXCL1P09341 ADAMTS10-211ENST00000597188 3749 ntAPPRIS P1 TSL 5 BASIC11.15□□□□□ -0.62
CXCL1P09341 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC11.15□□□□□ -0.62
CXCL1P09341 KLHL24-211ENST00000476808 2126 ntTSL 2 BASIC11.15□□□□□ -0.62
CXCL1P09341 SRP72-205ENST00000510663 2473 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
CXCL1P09341 GATC-203ENST00000551765 4244 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
CXCL1P09341 CHD1L-202ENST00000369258 2967 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
CXCL1P09341 SAP18-201ENST00000382533 2298 ntAPPRIS P2 TSL 1 (best) BASIC11.15□□□□□ -0.62
CXCL1P09341 MYRF-202ENST00000278836 5927 ntAPPRIS ALT2 TSL 1 (best) BASIC11.15□□□□□ -0.63
CXCL1P09341 ZNF275-201ENST00000370249 5920 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.63
CXCL1P09341 SLC24A4-204ENST00000531433 4531 ntAPPRIS ALT2 TSL 2 BASIC11.15□□□□□ -0.63
CXCL1P09341 ENDOV-207ENST00000518907 2418 ntTSL 1 (best) BASIC11.15□□□□□ -0.63
CXCL1P09341 EPHB1-201ENST00000398015 4672 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.63
CXCL1P09341 MSNP1-201ENST00000511640 1732 ntBASIC11.15□□□□□ -0.63
CXCL1P09341 AC004834.1-202ENST00000638785 1737 ntTSL 5 BASIC11.15□□□□□ -0.63
CXCL1P09341 SPIN3-207ENST00000638386 4461 ntAPPRIS P1 TSL 2 BASIC11.15□□□□□ -0.63
CXCL1P09341 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.63
CXCL1P09341 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC11.15□□□□□ -0.63
CXCL1P09341 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC11.15□□□□□ -0.63
CXCL1P09341 PLA2G15-201ENST00000219345 2727 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.63
CXCL1P09341 ITFG2-201ENST00000228799 2361 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
CXCL1P09341 NFATC1-203ENST00000329101 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC11.14□□□□□ -0.63
CXCL1P09341 CCDC18-203ENST00000401026 4552 ntAPPRIS ALT2 TSL 1 (best) BASIC11.14□□□□□ -0.63
CXCL1P09341 RGMA-203ENST00000542321 3038 ntAPPRIS ALT2 TSL 1 (best) BASIC11.14□□□□□ -0.63
CXCL1P09341 LYRM9-202ENST00000379103 1685 ntAPPRIS P1 TSL 3 BASIC11.14□□□□□ -0.63
CXCL1P09341 LRP5L-202ENST00000402859 1661 ntAPPRIS P2 TSL 5 BASIC11.14□□□□□ -0.63
CXCL1P09341 TNFSF13-203ENST00000380535 2195 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
CXCL1P09341 CETN4P-206ENST00000642099 2168 ntBASIC11.14□□□□□ -0.63
CXCL1P09341 PAX5-214ENST00000523241 1342 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
CXCL1P09341 SRGAP3-201ENST00000360413 8415 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
CXCL1P09341 NOS3-203ENST00000461406 3644 ntTSL 2 BASIC11.14□□□□□ -0.63
CXCL1P09341 GOLGA8EP-201ENST00000530246 1959 ntBASIC11.14□□□□□ -0.63
CXCL1P09341 NEU3-201ENST00000294064 6728 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
CXCL1P09341 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
CXCL1P09341 C10orf71-201ENST00000374144 5230 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
CXCL1P09341 CELSR1-201ENST00000262738 11389 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
CXCL1P09341 LINC01165-201ENST00000445190 1623 ntBASIC11.14□□□□□ -0.63
CXCL1P09341 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC11.14□□□□□ -0.63
CXCL1P09341 MYO15B-236ENST00000633867 6323 ntTSL 5 BASIC11.14□□□□□ -0.63
CXCL1P09341 EFHC1-221ENST00000636489 2421 ntTSL 5 BASIC11.14□□□□□ -0.63
CXCL1P09341 LINC00882-204ENST00000484698 2718 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
CXCL1P09341 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
CXCL1P09341 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC11.14□□□□□ -0.63
CXCL1P09341 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
CXCL1P09341 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
CXCL1P09341 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
CXCL1P09341 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
CXCL1P09341 AL080243.2-201ENST00000418783 582 ntBASIC11.14□□□□□ -0.63
CXCL1P09341 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
CXCL1P09341 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC11.14□□□□□ -0.63
CXCL1P09341 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC11.14□□□□□ -0.63
CXCL1P09341 PP7080-204ENST00000510714 601 ntTSL 3 BASIC11.14□□□□□ -0.63
CXCL1P09341 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC11.14□□□□□ -0.63
CXCL1P09341 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC11.14□□□□□ -0.63
CXCL1P09341 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC11.14□□□□□ -0.63
CXCL1P09341 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC11.14□□□□□ -0.63
CXCL1P09341 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
CXCL1P09341 AC022145.2-201ENST00000598203 171 ntBASIC11.14□□□□□ -0.63
CXCL1P09341 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC11.14□□□□□ -0.63
CXCL1P09341 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC11.14□□□□□ -0.63
CXCL1P09341 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC11.14□□□□□ -0.63
CXCL1P09341 MAP7D2-204ENST00000452324 2233 ntAPPRIS ALT2 TSL 2 BASIC11.14□□□□□ -0.63
CXCL1P09341 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC11.14□□□□□ -0.63
CXCL1P09341 BCL2L12-211ENST00000614495 1402 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
CXCL1P09341 MYH16-204ENST00000452010 1599 ntTSL 5 BASIC11.14□□□□□ -0.63
CXCL1P09341 THBS2-201ENST00000366787 5811 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
CXCL1P09341 ACTN1-205ENST00000538545 2813 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
CXCL1P09341 SHC1P1-201ENST00000425230 1745 ntBASIC11.14□□□□□ -0.63
CXCL1P09341 DPAGT1-217ENST00000639704 1719 ntTSL 5 BASIC11.14□□□□□ -0.63
CXCL1P09341 FOXN4-202ENST00000355216 2958 ntTSL 2 BASIC11.14□□□□□ -0.63
CXCL1P09341 PKP4P1-201ENST00000426801 2158 ntBASIC11.14□□□□□ -0.63
CXCL1P09341 PLOD2-201ENST00000282903 3732 ntAPPRIS P4 TSL 1 (best) BASIC11.14□□□□□ -0.63
CXCL1P09341 TMPRSS2-201ENST00000332149 3205 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
CXCL1P09341 GOLGA6L17P-202ENST00000614358 1398 ntBASIC11.14□□□□□ -0.63
CXCL1P09341 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC11.14□□□□□ -0.63
CXCL1P09341 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
CXCL1P09341 PPP1R11-204ENST00000376769 1689 ntTSL 2 BASIC11.14□□□□□ -0.63
CXCL1P09341 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC11.14□□□□□ -0.63
CXCL1P09341 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC11.14□□□□□ -0.63
CXCL1P09341 GRAMD4P3-201ENST00000621665 1669 ntBASIC11.14□□□□□ -0.63
CXCL1P09341 FLJ30679-201ENST00000624773 1980 ntBASIC11.14□□□□□ -0.63
CXCL1P09341 ALPK3-201ENST00000258888 10917 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
CXCL1P09341 PIWIL1-201ENST00000245255 3897 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
CXCL1P09341 CORO7-PAM16-202ENST00000572467 3284 ntAPPRIS P1 TSL 2 BASIC11.13□□□□□ -0.63
CXCL1P09341 DUSP4-202ENST00000240101 2959 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
CXCL1P09341 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC11.13□□□□□ -0.63
CXCL1P09341 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC11.13□□□□□ -0.63
CXCL1P09341 KCNMA1-208ENST00000372440 3849 ntAPPRIS ALT2 TSL 5 BASIC11.13□□□□□ -0.63
CXCL1P09341 KCNMA1-227ENST00000638203 3840 ntAPPRIS ALT2 TSL 5 BASIC11.13□□□□□ -0.63
Retrieved 100 of 98,524 protein–RNA pairs in 57.2 ms