Protein–RNA interactions for Protein: F8WFD2

NPIPA3, Nuclear pore complex-interacting protein family member A3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPIPA3F8WFD2 MIR4754-201ENST00000582477 89 ntBASIC13.11□□□□□ -0.31
NPIPA3F8WFD2 ELOF1-202ENST00000586120 658 ntAPPRIS P1 TSL 3 BASIC13.11□□□□□ -0.31
NPIPA3F8WFD2 SNRPD2-206ENST00000588301 702 ntAPPRIS P1 TSL 3 BASIC13.11□□□□□ -0.31
NPIPA3F8WFD2 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC13.11□□□□□ -0.31
NPIPA3F8WFD2 ZNF772-207ENST00000601768 482 ntTSL 3 BASIC13.11□□□□□ -0.31
NPIPA3F8WFD2 MIR6074-201ENST00000612054 107 ntBASIC13.11□□□□□ -0.31
NPIPA3F8WFD2 MIR6769A-201ENST00000617340 73 ntBASIC13.11□□□□□ -0.31
NPIPA3F8WFD2 CDK7-214ENST00000626796 358 ntTSL 5 BASIC13.11□□□□□ -0.31
NPIPA3F8WFD2 CDK7-215ENST00000629350 1149 ntTSL 5 BASIC13.11□□□□□ -0.31
NPIPA3F8WFD2 AC128714.1-201ENST00000637035 887 ntBASIC13.11□□□□□ -0.31
NPIPA3F8WFD2 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
NPIPA3F8WFD2 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
NPIPA3F8WFD2 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
NPIPA3F8WFD2 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
NPIPA3F8WFD2 ZEB2-204ENST00000409487 5361 ntAPPRIS P2 TSL 5 BASIC13.11□□□□□ -0.31
NPIPA3F8WFD2 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
NPIPA3F8WFD2 SVOPL-201ENST00000288513 1413 ntTSL 2 BASIC13.11□□□□□ -0.31
NPIPA3F8WFD2 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
NPIPA3F8WFD2 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC13.11□□□□□ -0.31
NPIPA3F8WFD2 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC13.11□□□□□ -0.31
NPIPA3F8WFD2 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC13.11□□□□□ -0.31
NPIPA3F8WFD2 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC13.11□□□□□ -0.31
NPIPA3F8WFD2 FRMD4B-201ENST00000398540 5060 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
NPIPA3F8WFD2 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
NPIPA3F8WFD2 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
NPIPA3F8WFD2 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
NPIPA3F8WFD2 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
NPIPA3F8WFD2 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
NPIPA3F8WFD2 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
NPIPA3F8WFD2 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
NPIPA3F8WFD2 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC13.11□□□□□ -0.31
NPIPA3F8WFD2 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC13.11□□□□□ -0.31
NPIPA3F8WFD2 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
NPIPA3F8WFD2 GPN3-201ENST00000228827 1468 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
NPIPA3F8WFD2 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
NPIPA3F8WFD2 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC13.1□□□□□ -0.31
NPIPA3F8WFD2 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
NPIPA3F8WFD2 SHOX-202ENST00000381575 1351 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
NPIPA3F8WFD2 CCDC51-202ENST00000412398 1385 ntTSL 2 BASIC13.1□□□□□ -0.31
NPIPA3F8WFD2 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
NPIPA3F8WFD2 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC13.1□□□□□ -0.31
NPIPA3F8WFD2 AC015909.3-201ENST00000572855 1794 ntBASIC13.1□□□□□ -0.31
NPIPA3F8WFD2 GRIP2-204ENST00000619221 7977 ntAPPRIS P5 TSL 5 BASIC13.1□□□□□ -0.31
NPIPA3F8WFD2 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC13.1□□□□□ -0.31
NPIPA3F8WFD2 MYBBP1A-201ENST00000254718 4807 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
NPIPA3F8WFD2 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
NPIPA3F8WFD2 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
NPIPA3F8WFD2 TTC39A-208ENST00000413473 2718 ntAPPRIS P4 TSL 1 (best) BASIC13.1□□□□□ -0.31
NPIPA3F8WFD2 CEMIP-202ENST00000356249 7297 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
NPIPA3F8WFD2 IGF2BP2-202ENST00000382199 3688 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
NPIPA3F8WFD2 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
NPIPA3F8WFD2 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
NPIPA3F8WFD2 FXNP2-201ENST00000411625 547 ntBASIC13.1□□□□□ -0.31
NPIPA3F8WFD2 LINC01006-202ENST00000418309 640 ntTSL 3 BASIC13.1□□□□□ -0.31
NPIPA3F8WFD2 XBP1P1-201ENST00000436573 652 ntBASIC13.1□□□□□ -0.31
NPIPA3F8WFD2 AC009403.1-204ENST00000469539 597 ntTSL 2 BASIC13.1□□□□□ -0.31
NPIPA3F8WFD2 UPK1B-205ENST00000497685 981 ntTSL 2 BASIC13.1□□□□□ -0.31
NPIPA3F8WFD2 AC138230.1-201ENST00000525893 664 ntTSL 5 BASIC13.1□□□□□ -0.31
NPIPA3F8WFD2 NAA40-206ENST00000542163 1035 ntTSL 2 BASIC13.1□□□□□ -0.31
NPIPA3F8WFD2 C12orf73-211ENST00000553183 660 ntAPPRIS P1 TSL 3 BASIC13.1□□□□□ -0.31
NPIPA3F8WFD2 GFER-204ENST00000567719 483 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
NPIPA3F8WFD2 IMPA2-207ENST00000588927 787 ntTSL 5 BASIC13.1□□□□□ -0.31
NPIPA3F8WFD2 EXOSC5-204ENST00000596905 826 ntTSL 2 BASIC13.1□□□□□ -0.31
NPIPA3F8WFD2 AL109837.1-201ENST00000603272 613 ntBASIC13.1□□□□□ -0.31
NPIPA3F8WFD2 ITGA9-AS1-213ENST00000614028 913 ntTSL 5 BASIC13.1□□□□□ -0.31
NPIPA3F8WFD2 AC007718.1-201ENST00000621078 280 ntBASIC13.1□□□□□ -0.31
NPIPA3F8WFD2 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
NPIPA3F8WFD2 ATN1-201ENST00000356654 4351 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
NPIPA3F8WFD2 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC13.1□□□□□ -0.31
NPIPA3F8WFD2 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
NPIPA3F8WFD2 CNTNAP3P2-201ENST00000617175 3861 ntBASIC13.1□□□□□ -0.31
NPIPA3F8WFD2 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC13.1□□□□□ -0.31
NPIPA3F8WFD2 CTR9-201ENST00000361367 4586 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
NPIPA3F8WFD2 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC13.1□□□□□ -0.31
NPIPA3F8WFD2 WDFY2-203ENST00000612477 6932 ntTSL 2 BASIC13.1□□□□□ -0.31
NPIPA3F8WFD2 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
NPIPA3F8WFD2 PIDD1-201ENST00000347755 2998 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
NPIPA3F8WFD2 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
NPIPA3F8WFD2 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
NPIPA3F8WFD2 AC006480.2-201ENST00000609770 1337 ntBASIC13.1□□□□□ -0.31
NPIPA3F8WFD2 GRIN2C-201ENST00000293190 4261 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
NPIPA3F8WFD2 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC13.1□□□□□ -0.31
NPIPA3F8WFD2 VGLL3-202ENST00000398399 10400 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
NPIPA3F8WFD2 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC13.09□□□□□ -0.31
NPIPA3F8WFD2 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
NPIPA3F8WFD2 VSIG10L-201ENST00000335624 3397 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
NPIPA3F8WFD2 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
NPIPA3F8WFD2 METTL17-221ENST00000556670 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
NPIPA3F8WFD2 C3orf33-205ENST00000534941 1804 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
NPIPA3F8WFD2 TRIM11-204ENST00000493030 5774 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
NPIPA3F8WFD2 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
NPIPA3F8WFD2 GLIS3-201ENST00000324333 6667 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
NPIPA3F8WFD2 NUDT1-203ENST00000356714 662 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
NPIPA3F8WFD2 Metazoa_SRP.6-201ENST00000366384 298 ntBASIC13.09□□□□□ -0.31
NPIPA3F8WFD2 PEA15-203ENST00000368077 1021 ntTSL 2 BASIC13.09□□□□□ -0.31
NPIPA3F8WFD2 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC13.09□□□□□ -0.31
NPIPA3F8WFD2 MIR33B-201ENST00000385104 96 ntBASIC13.09□□□□□ -0.31
NPIPA3F8WFD2 CALCA-203ENST00000396372 581 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
NPIPA3F8WFD2 NUDT1-204ENST00000397046 712 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
NPIPA3F8WFD2 MPV17-204ENST00000399052 749 ntTSL 4 BASIC13.09□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms