Protein–RNA interactions for Protein: Q9UI33

SCN11A, Sodium channel protein type 11 subunit alpha, humanhuman

Predictions only

Length 1,791 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN11AQ9UI33 MST1P2-201ENST00000457982 2291 ntBASIC17.83■□□□□ 0.44
SCN11AQ9UI33 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
SCN11AQ9UI33 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC17.82■□□□□ 0.44
SCN11AQ9UI33 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC17.82■□□□□ 0.44
SCN11AQ9UI33 POU2F2-204ENST00000526816 3218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
SCN11AQ9UI33 MARVELD2-203ENST00000436532 1563 ntTSL 5 BASIC17.82■□□□□ 0.44
SCN11AQ9UI33 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SCN11AQ9UI33 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
SCN11AQ9UI33 AC005912.2-201ENST00000619492 2400 ntBASIC17.82■□□□□ 0.44
SCN11AQ9UI33 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SCN11AQ9UI33 TIGD1-201ENST00000408957 2625 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
SCN11AQ9UI33 WFDC5-202ENST00000372789 1018 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SCN11AQ9UI33 CHEK2-203ENST00000382565 696 ntTSL 5 BASIC17.82■□□□□ 0.44
SCN11AQ9UI33 PGAM1P11-201ENST00000416729 680 ntBASIC17.82■□□□□ 0.44
SCN11AQ9UI33 RPL15-208ENST00000435882 1063 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
SCN11AQ9UI33 ANKRD2-204ENST00000455090 1072 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
SCN11AQ9UI33 AC099548.2-201ENST00000491047 571 ntTSL 4 BASIC17.82■□□□□ 0.44
SCN11AQ9UI33 HNRNPA1P56-201ENST00000505767 954 ntBASIC17.82■□□□□ 0.44
SCN11AQ9UI33 AC104964.1-201ENST00000520494 489 ntTSL 2 BASIC17.82■□□□□ 0.44
SCN11AQ9UI33 WNT5B-206ENST00000542408 508 ntTSL 3 BASIC17.82■□□□□ 0.44
SCN11AQ9UI33 MT1G-203ENST00000568675 628 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
SCN11AQ9UI33 NAA38-204ENST00000575208 529 ntTSL 3 BASIC17.82■□□□□ 0.44
SCN11AQ9UI33 LINC01836-201ENST00000586061 829 ntTSL 3 BASIC17.82■□□□□ 0.44
SCN11AQ9UI33 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
SCN11AQ9UI33 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC17.82■□□□□ 0.44
SCN11AQ9UI33 CHRNA1-203ENST00000409219 1466 ntTSL 3 BASIC17.82■□□□□ 0.44
SCN11AQ9UI33 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC17.82■□□□□ 0.44
SCN11AQ9UI33 PRKN-204ENST00000366896 2514 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
SCN11AQ9UI33 AL928654.5-201ENST00000624831 2501 ntBASIC17.82■□□□□ 0.44
SCN11AQ9UI33 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC17.82■□□□□ 0.44
SCN11AQ9UI33 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
SCN11AQ9UI33 GRHL1-202ENST00000405379 1881 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
SCN11AQ9UI33 UBA2-201ENST00000246548 4023 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SCN11AQ9UI33 LINC00675-202ENST00000581851 1530 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SCN11AQ9UI33 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC17.82■□□□□ 0.44
SCN11AQ9UI33 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC17.82■□□□□ 0.44
SCN11AQ9UI33 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
SCN11AQ9UI33 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC17.82■□□□□ 0.44
SCN11AQ9UI33 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
SCN11AQ9UI33 NUMB-216ENST00000555394 3037 ntAPPRIS ALT1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SCN11AQ9UI33 KANK2-205ENST00000589359 3048 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
SCN11AQ9UI33 PDCD6-201ENST00000264933 1135 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
SCN11AQ9UI33 MRAS-205ENST00000474559 856 ntAPPRIS P1 TSL 3 BASIC17.81■□□□□ 0.44
SCN11AQ9UI33 SRPK2P-201ENST00000523408 1100 ntBASIC17.81■□□□□ 0.44
SCN11AQ9UI33 AP000866.5-201ENST00000531241 445 ntTSL 5 BASIC17.81■□□□□ 0.44
SCN11AQ9UI33 AC026470.4-201ENST00000565812 308 ntTSL 3 BASIC17.81■□□□□ 0.44
SCN11AQ9UI33 MIR3940-201ENST00000579148 102 ntBASIC17.81■□□□□ 0.44
SCN11AQ9UI33 PDCD6-213ENST00000618970 931 ntTSL 3 BASIC17.81■□□□□ 0.44
SCN11AQ9UI33 AL590094.1-208ENST00000636917 627 ntTSL 5 BASIC17.81■□□□□ 0.44
SCN11AQ9UI33 CR382285.1-201ENST00000625012 1485 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
SCN11AQ9UI33 MARCH9-202ENST00000548358 1668 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
SCN11AQ9UI33 NT5C3A-213ENST00000610140 1670 ntAPPRIS ALT1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SCN11AQ9UI33 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SCN11AQ9UI33 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SCN11AQ9UI33 GFI1B-203ENST00000372123 1514 ntTSL 5 BASIC17.81■□□□□ 0.44
SCN11AQ9UI33 MTSS1-216ENST00000524090 2166 ntTSL 2 BASIC17.81■□□□□ 0.44
SCN11AQ9UI33 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SCN11AQ9UI33 KCTD6-205ENST00000490264 1759 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
SCN11AQ9UI33 SLC9A7P1-201ENST00000554295 3311 ntBASIC17.81■□□□□ 0.44
SCN11AQ9UI33 HS1BP3-201ENST00000304031 2370 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SCN11AQ9UI33 OPN1SW-201ENST00000249389 1096 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SCN11AQ9UI33 CDRT15L2-201ENST00000399044 1048 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
SCN11AQ9UI33 CD37-203ENST00000426897 1204 ntTSL 2 BASIC17.81■□□□□ 0.44
SCN11AQ9UI33 AC034228.2-201ENST00000432558 459 ntTSL 3 BASIC17.81■□□□□ 0.44
SCN11AQ9UI33 AC005009.2-201ENST00000452471 687 ntTSL 3 BASIC17.81■□□□□ 0.44
SCN11AQ9UI33 NPAS3-209ENST00000551008 1002 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
SCN11AQ9UI33 PACRG-AS3-203ENST00000614038 1246 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
SCN11AQ9UI33 CHMP5-202ENST00000419016 1957 ntTSL 2 BASIC17.81■□□□□ 0.44
SCN11AQ9UI33 NKX2-1-AS1-201ENST00000521292 1775 ntTSL 2 BASIC17.81■□□□□ 0.44
SCN11AQ9UI33 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SCN11AQ9UI33 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC17.81■□□□□ 0.44
SCN11AQ9UI33 ERP29-202ENST00000455836 1333 ntTSL 2 BASIC17.81■□□□□ 0.44
SCN11AQ9UI33 AC020931.1-201ENST00000589622 1346 ntBASIC17.81■□□□□ 0.44
SCN11AQ9UI33 GABRA1-201ENST00000023897 2083 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SCN11AQ9UI33 AL513497.1-201ENST00000624273 2083 ntBASIC17.8■□□□□ 0.44
SCN11AQ9UI33 DAXX-201ENST00000266000 2606 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
SCN11AQ9UI33 DRD3-202ENST00000383673 1640 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
SCN11AQ9UI33 RCBTB2-205ENST00000544492 2622 ntTSL 2 BASIC17.8■□□□□ 0.44
SCN11AQ9UI33 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
SCN11AQ9UI33 AL591623.1-201ENST00000417786 1960 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SCN11AQ9UI33 SLC13A5-202ENST00000381074 1738 ntTSL 2 BASIC17.8■□□□□ 0.44
SCN11AQ9UI33 MAGEC3-205ENST00000544766 1707 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
SCN11AQ9UI33 NIPAL3-203ENST00000358028 1757 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SCN11AQ9UI33 KRTAP6-1-201ENST00000329122 500 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
SCN11AQ9UI33 TEX33-201ENST00000381821 978 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
SCN11AQ9UI33 CASP8-206ENST00000392258 1060 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SCN11AQ9UI33 AL157823.1-201ENST00000403727 628 ntBASIC17.8■□□□□ 0.44
SCN11AQ9UI33 AL513165.1-201ENST00000413915 289 ntTSL 3 BASIC17.8■□□□□ 0.44
SCN11AQ9UI33 HNRNPA1P21-201ENST00000424115 961 ntBASIC17.8■□□□□ 0.44
SCN11AQ9UI33 AC078814.4-201ENST00000546650 327 ntBASIC17.8■□□□□ 0.44
SCN11AQ9UI33 AC009041.1-201ENST00000565401 544 ntTSL 4 BASIC17.8■□□□□ 0.44
SCN11AQ9UI33 KRT8P34-201ENST00000577607 1044 ntBASIC17.8■□□□□ 0.44
SCN11AQ9UI33 MIR5001-201ENST00000580185 100 ntBASIC17.8■□□□□ 0.44
SCN11AQ9UI33 NAV1-210ENST00000593583 726 ntBASIC17.8■□□□□ 0.44
SCN11AQ9UI33 AC012087.1-201ENST00000608068 809 ntTSL 5 BASIC17.8■□□□□ 0.44
SCN11AQ9UI33 Metazoa_SRP.63-201ENST00000617144 298 ntBASIC17.8■□□□□ 0.44
SCN11AQ9UI33 MKNK1-204ENST00000371946 2719 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SCN11AQ9UI33 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SCN11AQ9UI33 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC17.8■□□□□ 0.44
SCN11AQ9UI33 COASY-211ENST00000590958 1976 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 53.3 ms