Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 MPZL2-201ENST00000278937 2620 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
CCDC28BQ9BUN5 ADAMTS13-202ENST00000356589 4349 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
CCDC28BQ9BUN5 EIF4G3-204ENST00000374935 5567 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
CCDC28BQ9BUN5 PXDN-201ENST00000252804 6808 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
CCDC28BQ9BUN5 ANGPTL2-202ENST00000373425 3707 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
CCDC28BQ9BUN5 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
CCDC28BQ9BUN5 COL4A3-202ENST00000396578 8097 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC28BQ9BUN5 LINC01671-201ENST00000419628 1775 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC28BQ9BUN5 TTC39A-216ENST00000530004 1780 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC28BQ9BUN5 USE1-206ENST00000595101 1776 ntTSL 2 BASIC14.01□□□□□ -0.17
CCDC28BQ9BUN5 STIM1-201ENST00000300737 4038 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC28BQ9BUN5 ZNF263-202ENST00000538765 1721 ntTSL 2 BASIC14.01□□□□□ -0.17
CCDC28BQ9BUN5 SSTR5-AS1-204ENST00000569832 2864 ntTSL 2 BASIC14.01□□□□□ -0.17
CCDC28BQ9BUN5 SLC16A1-201ENST00000369626 3910 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC28BQ9BUN5 ALKBH5-201ENST00000399138 2748 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
CCDC28BQ9BUN5 AC144450.1-201ENST00000366424 1641 ntTSL 2 BASIC14.01□□□□□ -0.17
CCDC28BQ9BUN5 USP49-203ENST00000394253 9034 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
CCDC28BQ9BUN5 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC28BQ9BUN5 PARVB-201ENST00000338758 5429 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC28BQ9BUN5 ADAMTSL4-203ENST00000369039 4319 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
CCDC28BQ9BUN5 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC14.01□□□□□ -0.17
CCDC28BQ9BUN5 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC28BQ9BUN5 PCDHA5-203ENST00000614258 4248 ntBASIC14.01□□□□□ -0.17
CCDC28BQ9BUN5 KLHL13-204ENST00000371882 3256 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC28BQ9BUN5 POU2F2-216ENST00000560558 3282 ntTSL 5 BASIC14.01□□□□□ -0.17
CCDC28BQ9BUN5 TGOLN2-204ENST00000409015 2276 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC28BQ9BUN5 YIPF6-204ENST00000462683 6741 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC28BQ9BUN5 IFT81-201ENST00000242591 3108 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC28BQ9BUN5 INSC-207ENST00000528567 2237 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC28BQ9BUN5 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC28BQ9BUN5 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC28BQ9BUN5 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC28BQ9BUN5 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC14.01□□□□□ -0.17
CCDC28BQ9BUN5 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC28BQ9BUN5 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
CCDC28BQ9BUN5 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC28BQ9BUN5 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC28BQ9BUN5 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC28BQ9BUN5 GALT-202ENST00000450095 1280 ntTSL 2 BASIC14.01□□□□□ -0.17
CCDC28BQ9BUN5 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC28BQ9BUN5 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC14.01□□□□□ -0.17
CCDC28BQ9BUN5 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC28BQ9BUN5 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC14.01□□□□□ -0.17
CCDC28BQ9BUN5 AC123567.1-201ENST00000548294 1261 ntBASIC14.01□□□□□ -0.17
CCDC28BQ9BUN5 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC14.01□□□□□ -0.17
CCDC28BQ9BUN5 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC14.01□□□□□ -0.17
CCDC28BQ9BUN5 RN7SL48P-201ENST00000579283 293 ntBASIC14.01□□□□□ -0.17
CCDC28BQ9BUN5 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC28BQ9BUN5 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC14.01□□□□□ -0.17
CCDC28BQ9BUN5 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC28BQ9BUN5 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC28BQ9BUN5 PHF2-203ENST00000610682 2921 ntTSL 5 BASIC14.01□□□□□ -0.17
CCDC28BQ9BUN5 AC009093.2-202ENST00000620513 2079 ntBASIC14.01□□□□□ -0.17
CCDC28BQ9BUN5 TRIM80P-201ENST00000455685 2848 ntBASIC14.01□□□□□ -0.17
CCDC28BQ9BUN5 DHTKD1-201ENST00000263035 5159 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC28BQ9BUN5 KIAA0319-204ENST00000537886 6622 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC28BQ9BUN5 PEG13-201ENST00000631594 5667 ntBASIC14.01□□□□□ -0.17
CCDC28BQ9BUN5 LINC002481-201ENST00000499502 1821 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC28BQ9BUN5 PDE4D-203ENST00000340635 8232 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC28BQ9BUN5 SRPX-205ENST00000538295 1780 ntAPPRIS ALT2 TSL 2 BASIC14.01□□□□□ -0.17
CCDC28BQ9BUN5 COL6A2-203ENST00000397763 3101 ntTSL 5 BASIC14.01□□□□□ -0.17
CCDC28BQ9BUN5 SPIN3-245ENST00000640768 1722 ntTSL 5 BASIC14.01□□□□□ -0.17
CCDC28BQ9BUN5 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC14.01□□□□□ -0.17
CCDC28BQ9BUN5 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC28BQ9BUN5 IL20RA-203ENST00000367748 3522 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC28BQ9BUN5 JUN-201ENST00000371222 3540 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
CCDC28BQ9BUN5 POC5-202ENST00000428202 2229 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CCDC28BQ9BUN5 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC14□□□□□ -0.17
CCDC28BQ9BUN5 WIZ-202ENST00000389282 4067 ntTSL 1 (best) BASIC14□□□□□ -0.17
CCDC28BQ9BUN5 VAMP2-201ENST00000316509 2153 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
CCDC28BQ9BUN5 ZSWIM3-201ENST00000255152 2773 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CCDC28BQ9BUN5 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CCDC28BQ9BUN5 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CCDC28BQ9BUN5 MARK2-205ENST00000408948 2112 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
CCDC28BQ9BUN5 AC015802.6-201ENST00000640006 5654 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
CCDC28BQ9BUN5 STAG3-206ENST00000426455 4450 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
CCDC28BQ9BUN5 CPSF1-212ENST00000616140 4494 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CCDC28BQ9BUN5 NINL-203ENST00000422516 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
CCDC28BQ9BUN5 C3orf38-201ENST00000318887 2633 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CCDC28BQ9BUN5 CEP131-201ENST00000269392 3673 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
CCDC28BQ9BUN5 LOXHD1-203ENST00000398686 1958 ntTSL 1 (best) BASIC14□□□□□ -0.17
CCDC28BQ9BUN5 USP19-208ENST00000453664 4719 ntAPPRIS ALT2 TSL 2 BASIC14□□□□□ -0.17
CCDC28BQ9BUN5 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC14□□□□□ -0.17
CCDC28BQ9BUN5 SECISBP2-202ENST00000375807 3462 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CCDC28BQ9BUN5 ATG9B-203ENST00000469530 3489 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
CCDC28BQ9BUN5 CARHSP1-218ENST00000614449 2931 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
CCDC28BQ9BUN5 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CCDC28BQ9BUN5 PKIG-201ENST00000349959 1153 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CCDC28BQ9BUN5 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC14□□□□□ -0.17
CCDC28BQ9BUN5 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
CCDC28BQ9BUN5 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC14□□□□□ -0.17
CCDC28BQ9BUN5 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
CCDC28BQ9BUN5 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC14□□□□□ -0.17
CCDC28BQ9BUN5 AL392046.1-202ENST00000457255 521 ntTSL 5 BASIC14□□□□□ -0.17
CCDC28BQ9BUN5 AC093433.1-201ENST00000458048 571 ntBASIC14□□□□□ -0.17
CCDC28BQ9BUN5 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC14□□□□□ -0.17
CCDC28BQ9BUN5 AC022182.2-201ENST00000525556 859 ntTSL 2 BASIC14□□□□□ -0.17
CCDC28BQ9BUN5 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC14□□□□□ -0.17
CCDC28BQ9BUN5 PRR3-202ENST00000376560 2254 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CCDC28BQ9BUN5 SELENON-201ENST00000354177 4227 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms