Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 PITHD1-202ENST00000374524 1292 ntTSL 3 BASIC15.46■□□□□ 0.07
LRCH3Q96II8 SKA1-202ENST00000398452 979 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
LRCH3Q96II8 KRT8P6-201ENST00000399259 1207 ntBASIC15.46■□□□□ 0.07
LRCH3Q96II8 COPS7B-204ENST00000409091 806 ntTSL 5 BASIC15.46■□□□□ 0.07
LRCH3Q96II8 ID2-AS1-201ENST00000412712 953 ntTSL 5 BASIC15.46■□□□□ 0.07
LRCH3Q96II8 CBR3-AS1-202ENST00000427491 741 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
LRCH3Q96II8 AL954722.1-201ENST00000431238 259 ntBASIC15.46■□□□□ 0.07
LRCH3Q96II8 AL132657.1-201ENST00000432530 712 ntTSL 3 BASIC15.46■□□□□ 0.07
LRCH3Q96II8 AP001057.1-201ENST00000437557 799 ntTSL 5 BASIC15.46■□□□□ 0.07
LRCH3Q96II8 GALP-202ENST00000440823 889 ntTSL 5 BASIC15.46■□□□□ 0.07
LRCH3Q96II8 AC092903.1-201ENST00000466506 262 ntBASIC15.46■□□□□ 0.07
LRCH3Q96II8 AC025186.1-201ENST00000478174 870 ntBASIC15.46■□□□□ 0.07
LRCH3Q96II8 AC022113.2-201ENST00000504935 704 ntTSL 3 BASIC15.46■□□□□ 0.07
LRCH3Q96II8 AC106732.1-201ENST00000512458 550 ntTSL 4 BASIC15.46■□□□□ 0.07
LRCH3Q96II8 GAS7-216ENST00000583882 553 ntTSL 5 BASIC15.46■□□□□ 0.07
LRCH3Q96II8 FAAP24-203ENST00000589646 836 ntTSL 3 BASIC15.46■□□□□ 0.07
LRCH3Q96II8 AP001462.1-201ENST00000594089 452 ntBASIC15.46■□□□□ 0.07
LRCH3Q96II8 SCGB1B2P-201ENST00000595013 612 ntTSL 2 BASIC15.46■□□□□ 0.07
LRCH3Q96II8 CBR3-AS1-207ENST00000608641 777 ntTSL 5 BASIC15.46■□□□□ 0.07
LRCH3Q96II8 AC005746.3-201ENST00000614751 393 ntBASIC15.46■□□□□ 0.07
LRCH3Q96II8 AC079779.4-201ENST00000619113 548 ntTSL 5 BASIC15.46■□□□□ 0.07
LRCH3Q96II8 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC15.46■□□□□ 0.07
LRCH3Q96II8 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.07
LRCH3Q96II8 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
LRCH3Q96II8 G6PD-201ENST00000369620 1799 ntTSL 5 BASIC15.46■□□□□ 0.07
LRCH3Q96II8 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC15.46■□□□□ 0.07
LRCH3Q96II8 AC092127.1-201ENST00000567093 3455 ntBASIC15.46■□□□□ 0.07
LRCH3Q96II8 NCF4-201ENST00000248899 1396 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
LRCH3Q96II8 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
LRCH3Q96II8 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.07
LRCH3Q96II8 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
LRCH3Q96II8 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
LRCH3Q96II8 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC15.46■□□□□ 0.06
LRCH3Q96II8 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
LRCH3Q96II8 EFHC1-227ENST00000637089 2133 ntTSL 5 BASIC15.46■□□□□ 0.06
LRCH3Q96II8 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.06
LRCH3Q96II8 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC15.46■□□□□ 0.06
LRCH3Q96II8 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC15.45■□□□□ 0.06
LRCH3Q96II8 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
LRCH3Q96II8 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC15.45■□□□□ 0.06
LRCH3Q96II8 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC15.45■□□□□ 0.06
LRCH3Q96II8 DLK1-201ENST00000331224 1324 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
LRCH3Q96II8 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
LRCH3Q96II8 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
LRCH3Q96II8 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC15.45■□□□□ 0.06
LRCH3Q96II8 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
LRCH3Q96II8 ETNPPL-206ENST00000510706 1692 ntTSL 2 BASIC15.45■□□□□ 0.06
LRCH3Q96II8 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC15.45■□□□□ 0.06
LRCH3Q96II8 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC15.45■□□□□ 0.06
LRCH3Q96II8 SNX18-202ENST00000343017 3140 ntBASIC15.45■□□□□ 0.06
LRCH3Q96II8 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC15.45■□□□□ 0.06
LRCH3Q96II8 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
LRCH3Q96II8 TNNT2-207ENST00000367322 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
LRCH3Q96II8 ZNRD1-204ENST00000376785 754 ntAPPRIS P1 TSL 2 BASIC15.45■□□□□ 0.06
LRCH3Q96II8 CD300LG-203ENST00000377203 1060 ntAPPRIS ALT2 TSL 2 BASIC15.45■□□□□ 0.06
LRCH3Q96II8 WASIR1-201ENST00000399966 1054 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
LRCH3Q96II8 AL354893.2-201ENST00000423075 529 ntTSL 5 BASIC15.45■□□□□ 0.06
LRCH3Q96II8 BUD23-204ENST00000423497 1219 ntTSL 5 BASIC15.45■□□□□ 0.06
LRCH3Q96II8 HNRNPA1P2-207ENST00000432375 960 ntBASIC15.45■□□□□ 0.06
LRCH3Q96II8 AC068057.1-201ENST00000453322 709 ntTSL 2 BASIC15.45■□□□□ 0.06
LRCH3Q96II8 C1orf198-207ENST00000523410 1041 ntAPPRIS ALT2 TSL 2 BASIC15.45■□□□□ 0.06
LRCH3Q96II8 AC037486.1-201ENST00000523792 790 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
LRCH3Q96II8 KRT8P2-201ENST00000556193 944 ntBASIC15.45■□□□□ 0.06
LRCH3Q96II8 AC004584.1-201ENST00000572187 549 ntTSL 3 BASIC15.45■□□□□ 0.06
LRCH3Q96II8 RN7SL524P-201ENST00000581152 300 ntBASIC15.45■□□□□ 0.06
LRCH3Q96II8 AC023421.2-201ENST00000589510 313 ntTSL 5 BASIC15.45■□□□□ 0.06
LRCH3Q96II8 ZFP36-201ENST00000594045 690 ntTSL 3 BASIC15.45■□□□□ 0.06
LRCH3Q96II8 COQ4-204ENST00000608951 781 ntTSL 2 BASIC15.45■□□□□ 0.06
LRCH3Q96II8 AL109620.1-201ENST00000618738 1197 ntBASIC15.45■□□□□ 0.06
LRCH3Q96II8 Metazoa_SRP.156-201ENST00000622344 262 ntBASIC15.45■□□□□ 0.06
LRCH3Q96II8 AC005274.1-201ENST00000623460 802 ntBASIC15.45■□□□□ 0.06
LRCH3Q96II8 AL353658.2-201ENST00000629794 519 ntTSL 5 BASIC15.45■□□□□ 0.06
LRCH3Q96II8 AC245369.7-201ENST00000631386 350 ntBASIC15.45■□□□□ 0.06
LRCH3Q96II8 Metazoa_SRP.210-201ENST00000637921 244 ntBASIC15.45■□□□□ 0.06
LRCH3Q96II8 AC087481.3-201ENST00000602886 1894 ntBASIC15.45■□□□□ 0.06
LRCH3Q96II8 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
LRCH3Q96II8 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
LRCH3Q96II8 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC15.45■□□□□ 0.06
LRCH3Q96II8 ASGR1-209ENST00000619926 1384 ntTSL 5 BASIC15.45■□□□□ 0.06
LRCH3Q96II8 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC15.45■□□□□ 0.06
LRCH3Q96II8 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
LRCH3Q96II8 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
LRCH3Q96II8 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
LRCH3Q96II8 UBL4B-201ENST00000334179 1478 ntAPPRIS P1 BASIC15.45■□□□□ 0.06
LRCH3Q96II8 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
LRCH3Q96II8 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
LRCH3Q96II8 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
LRCH3Q96II8 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
LRCH3Q96II8 AC090616.6-203ENST00000579186 1945 ntBASIC15.45■□□□□ 0.06
LRCH3Q96II8 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
LRCH3Q96II8 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC15.44■□□□□ 0.06
LRCH3Q96II8 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC15.44■□□□□ 0.06
LRCH3Q96II8 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
LRCH3Q96II8 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
LRCH3Q96II8 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC15.44■□□□□ 0.06
LRCH3Q96II8 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
LRCH3Q96II8 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
LRCH3Q96II8 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC15.44■□□□□ 0.06
LRCH3Q96II8 PLEKHG6-202ENST00000304581 1424 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
LRCH3Q96II8 UBL7-206ENST00000565335 1414 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 45 ms