Protein–RNA interactions for Protein: Q2NKJ3

CTC1, CST complex subunit CTC1, humanhuman

Predictions only

Length 1,217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTC1Q2NKJ3 SLC50A1-202ENST00000368401 1166 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CTC1Q2NKJ3 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC15.32■□□□□ 0.04
CTC1Q2NKJ3 KRT17P4-201ENST00000429445 819 ntBASIC15.32■□□□□ 0.04
CTC1Q2NKJ3 LINC00211-203ENST00000446799 662 ntTSL 3 BASIC15.32■□□□□ 0.04
CTC1Q2NKJ3 AC084030.1-201ENST00000455068 561 ntTSL 4 BASIC15.32■□□□□ 0.04
CTC1Q2NKJ3 ATP1A4-205ENST00000470705 886 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CTC1Q2NKJ3 SOX2-OT-208ENST00000477928 902 ntTSL 2 BASIC15.32■□□□□ 0.04
CTC1Q2NKJ3 ZNF879-202ENST00000519896 543 ntTSL 4 BASIC15.32■□□□□ 0.04
CTC1Q2NKJ3 FAM86B3P-203ENST00000523992 854 ntBASIC15.32■□□□□ 0.04
CTC1Q2NKJ3 ACTN1-AS1-202ENST00000553961 599 ntTSL 4 BASIC15.32■□□□□ 0.04
CTC1Q2NKJ3 SRRM2-205ENST00000570971 1132 ntTSL 2 BASIC15.32■□□□□ 0.04
CTC1Q2NKJ3 LINC01569-203ENST00000573268 694 ntTSL 3 BASIC15.32■□□□□ 0.04
CTC1Q2NKJ3 MIR2392-201ENST00000584881 84 ntBASIC15.32■□□□□ 0.04
CTC1Q2NKJ3 AC055811.3-201ENST00000584952 686 ntBASIC15.32■□□□□ 0.04
CTC1Q2NKJ3 AC011471.3-201ENST00000623576 402 ntBASIC15.32■□□□□ 0.04
CTC1Q2NKJ3 AC113367.3-201ENST00000508316 1912 ntBASIC15.32■□□□□ 0.04
CTC1Q2NKJ3 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CTC1Q2NKJ3 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
CTC1Q2NKJ3 DLK1-201ENST00000331224 1324 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CTC1Q2NKJ3 CCNH-201ENST00000256897 1378 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CTC1Q2NKJ3 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CTC1Q2NKJ3 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CTC1Q2NKJ3 REXO1L2P-201ENST00000425429 2069 ntBASIC15.32■□□□□ 0.04
CTC1Q2NKJ3 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
CTC1Q2NKJ3 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CTC1Q2NKJ3 SUOX-201ENST00000266971 2364 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
CTC1Q2NKJ3 ADSL-201ENST00000216194 1620 ntTSL 2 BASIC15.32■□□□□ 0.04
CTC1Q2NKJ3 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC15.32■□□□□ 0.04
CTC1Q2NKJ3 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
CTC1Q2NKJ3 CLEC16A-202ENST00000409552 3365 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CTC1Q2NKJ3 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
CTC1Q2NKJ3 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CTC1Q2NKJ3 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
CTC1Q2NKJ3 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC15.31■□□□□ 0.04
CTC1Q2NKJ3 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CTC1Q2NKJ3 FBRS-201ENST00000287468 2811 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
CTC1Q2NKJ3 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC15.31■□□□□ 0.04
CTC1Q2NKJ3 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CTC1Q2NKJ3 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CTC1Q2NKJ3 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CTC1Q2NKJ3 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
CTC1Q2NKJ3 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CTC1Q2NKJ3 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC15.31■□□□□ 0.04
CTC1Q2NKJ3 ZNF790-207ENST00000614179 2361 ntAPPRIS P1 TSL 3 BASIC15.31■□□□□ 0.04
CTC1Q2NKJ3 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
CTC1Q2NKJ3 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC15.31■□□□□ 0.04
CTC1Q2NKJ3 MAD2L2-206ENST00000376672 1002 ntTSL 3 BASIC15.31■□□□□ 0.04
CTC1Q2NKJ3 ADARB2-AS1-201ENST00000381301 625 ntTSL 2 BASIC15.31■□□□□ 0.04
CTC1Q2NKJ3 AL139125.1-201ENST00000420395 557 ntTSL 3 BASIC15.31■□□□□ 0.04
CTC1Q2NKJ3 AC156455.1-203ENST00000423999 893 ntTSL 2 BASIC15.31■□□□□ 0.04
CTC1Q2NKJ3 PRRC2B-207ENST00000458550 899 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CTC1Q2NKJ3 DMKN-256ENST00000492341 738 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
CTC1Q2NKJ3 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC15.31■□□□□ 0.04
CTC1Q2NKJ3 KRT33A-201ENST00000007735 1287 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CTC1Q2NKJ3 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CTC1Q2NKJ3 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CTC1Q2NKJ3 FBXO16-202ENST00000380254 1343 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
CTC1Q2NKJ3 LRRFIP1-203ENST00000308482 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
CTC1Q2NKJ3 CORO7-222ENST00000574025 2826 ntTSL 2 BASIC15.31■□□□□ 0.04
CTC1Q2NKJ3 ALG11-203ENST00000523764 1404 ntTSL 2 BASIC15.31■□□□□ 0.04
CTC1Q2NKJ3 KDELR2-201ENST00000258739 2884 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CTC1Q2NKJ3 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC15.31■□□□□ 0.04
CTC1Q2NKJ3 AC148477.2-201ENST00000537762 3039 ntTSL 3 BASIC15.31■□□□□ 0.04
CTC1Q2NKJ3 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
CTC1Q2NKJ3 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CTC1Q2NKJ3 METTL17-201ENST00000339374 1749 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
CTC1Q2NKJ3 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
CTC1Q2NKJ3 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
CTC1Q2NKJ3 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CTC1Q2NKJ3 TBC1D17-201ENST00000221543 2366 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CTC1Q2NKJ3 UGT3A2-201ENST00000282507 2355 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CTC1Q2NKJ3 TBC1D17-209ENST00000622860 2370 ntTSL 5 BASIC15.31■□□□□ 0.04
CTC1Q2NKJ3 UBA1-202ENST00000377269 2497 ntTSL 2 BASIC15.31■□□□□ 0.04
CTC1Q2NKJ3 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CTC1Q2NKJ3 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CTC1Q2NKJ3 HNRNPH3-201ENST00000265866 2339 ntAPPRIS P4 TSL 1 (best) BASIC15.3■□□□□ 0.04
CTC1Q2NKJ3 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
CTC1Q2NKJ3 ACSM1-201ENST00000307493 2051 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CTC1Q2NKJ3 POLM-202ENST00000335195 2444 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CTC1Q2NKJ3 COX20P1-201ENST00000366529 357 ntBASIC15.3■□□□□ 0.04
CTC1Q2NKJ3 GJB1-203ENST00000374029 1587 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
CTC1Q2NKJ3 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CTC1Q2NKJ3 ATP6V0A1-203ENST00000393829 3028 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CTC1Q2NKJ3 RBM14-204ENST00000409738 372 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CTC1Q2NKJ3 NUPL2-202ENST00000410002 680 ntTSL 2 BASIC15.3■□□□□ 0.04
CTC1Q2NKJ3 AC079447.1-201ENST00000424491 1947 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
CTC1Q2NKJ3 NCBP2-206ENST00000447325 2216 ntTSL 2 BASIC15.3■□□□□ 0.04
CTC1Q2NKJ3 CDYL-205ENST00000449732 2139 ntTSL 2 BASIC15.3■□□□□ 0.04
CTC1Q2NKJ3 FAM90A21P-201ENST00000510875 1396 ntBASIC15.3■□□□□ 0.04
CTC1Q2NKJ3 FAM90A15P-201ENST00000514465 1395 ntBASIC15.3■□□□□ 0.04
CTC1Q2NKJ3 FAM90A6P-201ENST00000515148 1394 ntBASIC15.3■□□□□ 0.04
CTC1Q2NKJ3 PAGE3-202ENST00000519203 577 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CTC1Q2NKJ3 FAM90A16P-201ENST00000526662 1395 ntBASIC15.3■□□□□ 0.04
CTC1Q2NKJ3 FAM90A9P-201ENST00000527940 1395 ntBASIC15.3■□□□□ 0.04
CTC1Q2NKJ3 FAM90A5P-201ENST00000528738 1395 ntBASIC15.3■□□□□ 0.04
CTC1Q2NKJ3 FAM90A14P-201ENST00000530386 1395 ntBASIC15.3■□□□□ 0.04
CTC1Q2NKJ3 FAM90A13P-201ENST00000534703 1395 ntBASIC15.3■□□□□ 0.04
CTC1Q2NKJ3 KRT8P1-201ENST00000557533 1207 ntBASIC15.3■□□□□ 0.04
CTC1Q2NKJ3 AC068867.1-201ENST00000559855 150 ntBASIC15.3■□□□□ 0.04
CTC1Q2NKJ3 ERCC1-208ENST00000589165 1453 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 54.8 ms