Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC11.65□□□□□ -0.54
CX3CL1P78423 XPR1-201ENST00000367589 4126 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
CX3CL1P78423 CCDC117-202ENST00000421503 3766 ntTSL 2 BASIC11.65□□□□□ -0.54
CX3CL1P78423 HIPK1-205ENST00000369558 8157 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
CX3CL1P78423 TRIM65-201ENST00000269383 3439 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
CX3CL1P78423 DNM1-212ENST00000627543 4734 ntAPPRIS ALT1 TSL 5 BASIC11.65□□□□□ -0.54
CX3CL1P78423 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC11.65□□□□□ -0.54
CX3CL1P78423 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC11.65□□□□□ -0.54
CX3CL1P78423 TTLL4-212ENST00000457313 3723 ntTSL 2 BASIC11.65□□□□□ -0.54
CX3CL1P78423 MED22-209ENST00000610888 3867 ntAPPRIS ALT1 TSL 1 (best) BASIC11.65□□□□□ -0.54
CX3CL1P78423 GDF9-201ENST00000296875 1796 ntTSL 5 BASIC11.65□□□□□ -0.54
CX3CL1P78423 NPRL3-212ENST00000620134 3203 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
CX3CL1P78423 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC11.65□□□□□ -0.54
CX3CL1P78423 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC11.65□□□□□ -0.54
CX3CL1P78423 AP4B1-201ENST00000256658 2742 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
CX3CL1P78423 SF1-201ENST00000227503 2850 ntAPPRIS P3 TSL 1 (best) BASIC11.65□□□□□ -0.54
CX3CL1P78423 NDNF-201ENST00000379692 2885 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
CX3CL1P78423 ZNF674-AS1-201ENST00000421685 2078 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
CX3CL1P78423 AL357054.3-201ENST00000607084 2055 ntTSL 5 BASIC11.65□□□□□ -0.54
CX3CL1P78423 MIR326-201ENST00000362220 95 ntBASIC11.65□□□□□ -0.54
CX3CL1P78423 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
CX3CL1P78423 AK6-201ENST00000380818 1183 ntTSL 2 BASIC11.65□□□□□ -0.54
CX3CL1P78423 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC11.65□□□□□ -0.54
CX3CL1P78423 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
CX3CL1P78423 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC11.65□□□□□ -0.54
CX3CL1P78423 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC11.65□□□□□ -0.54
CX3CL1P78423 AC079178.1-201ENST00000420915 656 ntBASIC11.65□□□□□ -0.54
CX3CL1P78423 WBP2-203ENST00000433525 928 ntTSL 2 BASIC11.65□□□□□ -0.54
CX3CL1P78423 SKA2-202ENST00000437036 625 ntTSL 2 BASIC11.65□□□□□ -0.54
CX3CL1P78423 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC11.65□□□□□ -0.54
CX3CL1P78423 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC11.65□□□□□ -0.54
CX3CL1P78423 AC100850.1-201ENST00000506768 649 ntBASIC11.65□□□□□ -0.54
CX3CL1P78423 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
CX3CL1P78423 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC11.65□□□□□ -0.54
CX3CL1P78423 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
CX3CL1P78423 AC010328.2-201ENST00000597698 1111 ntBASIC11.65□□□□□ -0.54
CX3CL1P78423 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
CX3CL1P78423 AC244157.2-201ENST00000616239 1006 ntBASIC11.65□□□□□ -0.54
CX3CL1P78423 AL512306.2-201ENST00000444037 2219 ntTSL 2 BASIC11.65□□□□□ -0.54
CX3CL1P78423 PAM-201ENST00000304400 3156 ntAPPRIS P3 TSL 1 (best) BASIC11.65□□□□□ -0.54
CX3CL1P78423 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
CX3CL1P78423 AC009093.10-201ENST00000641956 1442 ntBASIC11.65□□□□□ -0.54
CX3CL1P78423 PSMC1-201ENST00000261303 4448 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
CX3CL1P78423 PABPC1-201ENST00000318607 3485 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
CX3CL1P78423 SH3TC2-202ENST00000502274 2681 ntTSL 2 BASIC11.65□□□□□ -0.54
CX3CL1P78423 DGKD-201ENST00000264057 6297 ntAPPRIS P3 TSL 1 (best) BASIC11.65□□□□□ -0.54
CX3CL1P78423 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC11.65□□□□□ -0.54
CX3CL1P78423 RMDN3-201ENST00000260385 3138 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
CX3CL1P78423 CHFR-205ENST00000450056 3250 ntTSL 2 BASIC11.65□□□□□ -0.54
CX3CL1P78423 MARK4-201ENST00000262891 3573 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
CX3CL1P78423 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC11.65□□□□□ -0.54
CX3CL1P78423 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
CX3CL1P78423 FAM9C-205ENST00000542843 5858 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
CX3CL1P78423 CALML3-201ENST00000315238 2763 ntAPPRIS P1 BASIC11.65□□□□□ -0.54
CX3CL1P78423 GLB1L2-205ENST00000535456 3365 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
CX3CL1P78423 KRT8P28-201ENST00000433288 1390 ntBASIC11.65□□□□□ -0.55
CX3CL1P78423 SNAP29-201ENST00000215730 4287 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.55
CX3CL1P78423 HACD2-201ENST00000383657 4257 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.55
CX3CL1P78423 LINC01873-201ENST00000428647 1679 ntTSL 1 (best) BASIC11.65□□□□□ -0.55
CX3CL1P78423 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.55
CX3CL1P78423 USP31-203ENST00000567975 2142 ntTSL 2 BASIC11.65□□□□□ -0.55
CX3CL1P78423 VIPR1-202ENST00000433647 3161 ntTSL 2 BASIC11.65□□□□□ -0.55
CX3CL1P78423 RPS6KC1-208ENST00000614059 4188 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
CX3CL1P78423 POLN-210ENST00000511885 3253 ntAPPRIS P1 TSL 5 BASIC11.64□□□□□ -0.55
CX3CL1P78423 TMCC2-201ENST00000329800 2818 ntTSL 2 BASIC11.64□□□□□ -0.55
CX3CL1P78423 PRF1-202ENST00000441259 2533 ntAPPRIS P1 TSL 5 BASIC11.64□□□□□ -0.55
CX3CL1P78423 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC11.64□□□□□ -0.55
CX3CL1P78423 RN7SL832P-201ENST00000607781 1756 ntBASIC11.64□□□□□ -0.55
CX3CL1P78423 WDR17-205ENST00000508596 4294 ntAPPRIS ALT1 TSL 1 (best) BASIC11.64□□□□□ -0.55
CX3CL1P78423 SNAP91-215ENST00000521743 4263 ntAPPRIS P2 TSL 5 BASIC11.64□□□□□ -0.55
CX3CL1P78423 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC11.64□□□□□ -0.55
CX3CL1P78423 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC11.64□□□□□ -0.55
CX3CL1P78423 RBL1-201ENST00000344359 3225 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
CX3CL1P78423 CFAP65-203ENST00000409865 2769 ntAPPRIS ALT2 TSL 2 BASIC11.64□□□□□ -0.55
CX3CL1P78423 COG5-202ENST00000347053 4532 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
CX3CL1P78423 XPNPEP1-201ENST00000322238 2467 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
CX3CL1P78423 NUTM2HP-201ENST00000442076 2498 ntBASIC11.64□□□□□ -0.55
CX3CL1P78423 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
CX3CL1P78423 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
CX3CL1P78423 GSN-209ENST00000449733 2702 ntTSL 2 BASIC11.64□□□□□ -0.55
CX3CL1P78423 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC11.64□□□□□ -0.55
CX3CL1P78423 THBD-201ENST00000377103 4109 ntAPPRIS P1 BASIC11.64□□□□□ -0.55
CX3CL1P78423 SCD5-202ENST00000319540 3101 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
CX3CL1P78423 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
CX3CL1P78423 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
CX3CL1P78423 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
CX3CL1P78423 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
CX3CL1P78423 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC11.64□□□□□ -0.55
CX3CL1P78423 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC11.64□□□□□ -0.55
CX3CL1P78423 TISP43-201ENST00000409793 538 ntTSL 4 BASIC11.64□□□□□ -0.55
CX3CL1P78423 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
CX3CL1P78423 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
CX3CL1P78423 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
CX3CL1P78423 RNA5SP412-201ENST00000516234 123 ntBASIC11.64□□□□□ -0.55
CX3CL1P78423 MFF-223ENST00000524634 647 ntTSL 2 BASIC11.64□□□□□ -0.55
CX3CL1P78423 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC11.64□□□□□ -0.55
CX3CL1P78423 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC11.64□□□□□ -0.55
CX3CL1P78423 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC11.64□□□□□ -0.55
CX3CL1P78423 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC11.64□□□□□ -0.55
CX3CL1P78423 SORD2P-201ENST00000558556 1069 ntBASIC11.64□□□□□ -0.55
Retrieved 100 of 98,524 protein–RNA pairs in 60.6 ms