Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
CLRN1P58418 DISC1-206ENST00000366637 6848 ntAPPRIS ALT2 TSL 5 BASIC12.88□□□□□ -0.35
CLRN1P58418 FAM76A-203ENST00000373949 2273 ntTSL 2 BASIC12.88□□□□□ -0.35
CLRN1P58418 ZKSCAN4-201ENST00000377294 2375 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
CLRN1P58418 R3HDM2-204ENST00000402412 4372 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
CLRN1P58418 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
CLRN1P58418 AC015818.8-201ENST00000587907 1519 ntBASIC12.88□□□□□ -0.35
CLRN1P58418 TRIM41-201ENST00000315073 3637 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
CLRN1P58418 FAM120C-201ENST00000328235 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
CLRN1P58418 GPX3-201ENST00000388825 1636 ntAPPRIS P2 TSL 1 (best) BASIC12.88□□□□□ -0.35
CLRN1P58418 CLASRP-204ENST00000544944 2769 ntAPPRIS ALT2 TSL 2 BASIC12.88□□□□□ -0.35
CLRN1P58418 PRPF38A-201ENST00000257181 5274 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
CLRN1P58418 CAMK2B-217ENST00000457475 4142 ntTSL 5 BASIC12.88□□□□□ -0.35
CLRN1P58418 ABCG1-205ENST00000398449 2998 ntAPPRIS ALT1 TSL 1 (best) BASIC12.88□□□□□ -0.35
CLRN1P58418 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC12.88□□□□□ -0.35
CLRN1P58418 MFAP4-202ENST00000395592 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
CLRN1P58418 DNAAF5-202ENST00000403952 1907 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
CLRN1P58418 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
CLRN1P58418 LINC00479-201ENST00000412102 2033 ntTSL 2 BASIC12.88□□□□□ -0.35
CLRN1P58418 AC090643.2-201ENST00000623442 2029 ntBASIC12.88□□□□□ -0.35
CLRN1P58418 ZKSCAN7-201ENST00000273320 3477 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
CLRN1P58418 PGLYRP4-202ENST00000368739 2116 ntAPPRIS ALT1 TSL 5 BASIC12.88□□□□□ -0.35
CLRN1P58418 CCDC117-202ENST00000421503 3766 ntTSL 2 BASIC12.88□□□□□ -0.35
CLRN1P58418 KIAA1217-209ENST00000430453 5962 ntAPPRIS ALT2 TSL 5 BASIC12.88□□□□□ -0.35
CLRN1P58418 KIAA1217-211ENST00000458595 5977 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
CLRN1P58418 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
CLRN1P58418 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
CLRN1P58418 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
CLRN1P58418 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
CLRN1P58418 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
CLRN1P58418 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC12.88□□□□□ -0.35
CLRN1P58418 AL354877.1-201ENST00000424412 413 ntBASIC12.88□□□□□ -0.35
CLRN1P58418 EPDR1-203ENST00000425345 947 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
CLRN1P58418 MTX1P1-201ENST00000440904 838 ntBASIC12.88□□□□□ -0.35
CLRN1P58418 Z93015.1-201ENST00000451718 390 ntBASIC12.88□□□□□ -0.35
CLRN1P58418 AC012507.1-201ENST00000454890 600 ntTSL 4 BASIC12.88□□□□□ -0.35
CLRN1P58418 AC021723.1-201ENST00000486306 515 ntBASIC12.88□□□□□ -0.35
CLRN1P58418 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC12.88□□□□□ -0.35
CLRN1P58418 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC12.88□□□□□ -0.35
CLRN1P58418 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC12.88□□□□□ -0.35
CLRN1P58418 AC011773.1-201ENST00000520129 468 ntTSL 5 BASIC12.88□□□□□ -0.35
CLRN1P58418 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC12.88□□□□□ -0.35
CLRN1P58418 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC12.88□□□□□ -0.35
CLRN1P58418 KLK3-207ENST00000595952 969 ntTSL 3 BASIC12.88□□□□□ -0.35
CLRN1P58418 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC12.88□□□□□ -0.35
CLRN1P58418 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC12.88□□□□□ -0.35
CLRN1P58418 RPL35-206ENST00000629845 340 ntTSL 5 BASIC12.88□□□□□ -0.35
CLRN1P58418 AC079325.2-202ENST00000641031 462 ntAPPRIS ALT2 BASIC12.88□□□□□ -0.35
CLRN1P58418 EMILIN1-201ENST00000380320 3943 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
CLRN1P58418 TAF12-201ENST00000263974 1359 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
CLRN1P58418 SPPL3-201ENST00000353487 4148 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
CLRN1P58418 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC12.88□□□□□ -0.35
CLRN1P58418 ZNF691-206ENST00000372508 1577 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
CLRN1P58418 TNS2-203ENST00000379902 4737 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
CLRN1P58418 CLUAP1-202ENST00000571025 5126 ntTSL 2 BASIC12.88□□□□□ -0.35
CLRN1P58418 PER3-201ENST00000361923 6203 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
CLRN1P58418 ATL2-210ENST00000452935 2199 ntTSL 2 BASIC12.88□□□□□ -0.35
CLRN1P58418 LMAN2L-201ENST00000264963 2397 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
CLRN1P58418 RBPMS-201ENST00000287771 2974 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
CLRN1P58418 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
CLRN1P58418 SUSD6-201ENST00000342745 5388 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
CLRN1P58418 MYO9B-204ENST00000594824 7595 ntAPPRIS P1 TSL 5 BASIC12.88□□□□□ -0.35
CLRN1P58418 GIPC3-201ENST00000322315 4335 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
CLRN1P58418 NUBPL-201ENST00000281081 3049 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
CLRN1P58418 CXorf36-201ENST00000377934 2513 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
CLRN1P58418 LAT2-205ENST00000460943 2527 ntAPPRIS P2 TSL 1 (best) BASIC12.88□□□□□ -0.35
CLRN1P58418 C1R-201ENST00000535233 2211 ntTSL 2 BASIC12.88□□□□□ -0.35
CLRN1P58418 VRK3-217ENST00000599538 2126 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
CLRN1P58418 AL022313.4-201ENST00000562756 2046 ntBASIC12.88□□□□□ -0.35
CLRN1P58418 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC12.88□□□□□ -0.35
CLRN1P58418 ZBTB7B-202ENST00000368426 3594 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
CLRN1P58418 MBP-205ENST00000397860 4844 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
CLRN1P58418 KDELR2-201ENST00000258739 2884 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
CLRN1P58418 ZNF335-201ENST00000322927 4430 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
CLRN1P58418 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
CLRN1P58418 ZCCHC8-207ENST00000543897 5663 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
CLRN1P58418 ALPK3-201ENST00000258888 10917 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
CLRN1P58418 ALDH1A3-202ENST00000346623 3104 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
CLRN1P58418 STIM1-220ENST00000616714 4356 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
CLRN1P58418 SLC4A8-204ENST00000514353 3041 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
CLRN1P58418 LRIF1-202ENST00000485275 1796 ntAPPRIS ALT2 TSL 2 BASIC12.87□□□□□ -0.35
CLRN1P58418 FAM186B-201ENST00000257894 2944 ntAPPRIS P2 TSL 1 (best) BASIC12.87□□□□□ -0.35
CLRN1P58418 ZNF663P-201ENST00000400371 2722 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
CLRN1P58418 SAMD4B-201ENST00000314471 4519 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
CLRN1P58418 AMOTL2-212ENST00000514516 4521 ntTSL 2 BASIC12.87□□□□□ -0.35
CLRN1P58418 SLC51A-201ENST00000296327 1463 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
CLRN1P58418 C20orf203-202ENST00000608990 5076 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
CLRN1P58418 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
CLRN1P58418 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
CLRN1P58418 Metazoa_SRP.6-201ENST00000366384 298 ntBASIC12.87□□□□□ -0.35
CLRN1P58418 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC12.87□□□□□ -0.35
CLRN1P58418 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
CLRN1P58418 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
CLRN1P58418 AL450469.2-201ENST00000427132 499 ntTSL 3 BASIC12.87□□□□□ -0.35
CLRN1P58418 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
CLRN1P58418 ZNF529-AS1-201ENST00000448373 1004 ntTSL 2 BASIC12.87□□□□□ -0.35
CLRN1P58418 AC010973.2-201ENST00000485974 1230 ntTSL 2 BASIC12.87□□□□□ -0.35
CLRN1P58418 HMGCLL1-208ENST00000508459 884 ntTSL 2 BASIC12.87□□□□□ -0.35
CLRN1P58418 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC12.87□□□□□ -0.35
CLRN1P58418 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms