Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC15.24■□□□□ 0.03
LIG3P49916 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
LIG3P49916 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
LIG3P49916 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
LIG3P49916 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC15.24■□□□□ 0.03
LIG3P49916 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC15.24■□□□□ 0.03
LIG3P49916 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC15.24■□□□□ 0.03
LIG3P49916 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC15.24■□□□□ 0.03
LIG3P49916 TBCE-207ENST00000543662 2117 ntAPPRIS ALT2 TSL 2 BASIC15.24■□□□□ 0.03
LIG3P49916 LARP4-220ENST00000615080 856 ntTSL 5 BASIC15.24■□□□□ 0.03
LIG3P49916 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
LIG3P49916 AC132938.4-201ENST00000623835 848 ntBASIC15.24■□□□□ 0.03
LIG3P49916 GTF2IRD2-201ENST00000451013 3558 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LIG3P49916 POM121-201ENST00000358357 5320 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
LIG3P49916 ARHGEF4-217ENST00000611048 3486 ntTSL 5 BASIC15.24■□□□□ 0.03
LIG3P49916 ZNF559-202ENST00000393883 5095 ntAPPRIS P3 TSL 2 BASIC15.24■□□□□ 0.03
LIG3P49916 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
LIG3P49916 RBM6-211ENST00000443081 4010 ntTSL 5 BASIC15.24■□□□□ 0.03
LIG3P49916 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
LIG3P49916 OCRL-202ENST00000371113 5162 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LIG3P49916 ADRA2B-201ENST00000620793 3371 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
LIG3P49916 SPRY1-208ENST00000622283 2352 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
LIG3P49916 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
LIG3P49916 TIPARP-201ENST00000295924 4109 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LIG3P49916 B3GAT1-202ENST00000392580 3522 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LIG3P49916 EIF3C-201ENST00000331666 3145 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LIG3P49916 CLEC18B-204ENST00000617101 2321 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
LIG3P49916 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
LIG3P49916 REXO1L4P-201ENST00000605109 1937 ntBASIC15.23■□□□□ 0.03
LIG3P49916 SFI1-229ENST00000540643 4226 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
LIG3P49916 HMOX2-216ENST00000613539 1703 ntTSL 5 BASIC15.23■□□□□ 0.03
LIG3P49916 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
LIG3P49916 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LIG3P49916 AL360270.3-201ENST00000609118 1348 ntBASIC15.23■□□□□ 0.03
LIG3P49916 MKS1-201ENST00000313863 2091 ntTSL 5 BASIC15.23■□□□□ 0.03
LIG3P49916 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
LIG3P49916 PCDHA11-201ENST00000398640 6115 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
LIG3P49916 PCDHGA11-201ENST00000398587 4647 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
LIG3P49916 LARP4-201ENST00000293618 6296 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
LIG3P49916 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
LIG3P49916 ANO10-202ENST00000350459 2039 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
LIG3P49916 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC15.23■□□□□ 0.03
LIG3P49916 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LIG3P49916 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LIG3P49916 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LIG3P49916 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LIG3P49916 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LIG3P49916 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC15.23■□□□□ 0.03
LIG3P49916 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC15.23■□□□□ 0.03
LIG3P49916 B9D1-203ENST00000395615 805 ntTSL 3 BASIC15.23■□□□□ 0.03
LIG3P49916 LSM5-207ENST00000410044 687 ntTSL 3 BASIC15.23■□□□□ 0.03
LIG3P49916 CNN2P8-201ENST00000421872 913 ntBASIC15.23■□□□□ 0.03
LIG3P49916 HLA-K-203ENST00000430151 1046 ntBASIC15.23■□□□□ 0.03
LIG3P49916 FAM197Y7-201ENST00000432892 766 ntBASIC15.23■□□□□ 0.03
LIG3P49916 RPS2P32-201ENST00000439199 892 ntBASIC15.23■□□□□ 0.03
LIG3P49916 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC15.23■□□□□ 0.03
LIG3P49916 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC15.23■□□□□ 0.03
LIG3P49916 AC022616.1-201ENST00000518688 554 ntBASIC15.23■□□□□ 0.03
LIG3P49916 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC15.23■□□□□ 0.03
LIG3P49916 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC15.23■□□□□ 0.03
LIG3P49916 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
LIG3P49916 KLHL13-204ENST00000371882 3256 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
LIG3P49916 RIPOR1-204ENST00000428437 4152 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
LIG3P49916 TCOF1-202ENST00000377797 5095 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
LIG3P49916 AL157414.3-201ENST00000624276 1954 ntBASIC15.23■□□□□ 0.03
LIG3P49916 TRIM25-201ENST00000316881 5734 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LIG3P49916 TMC5-204ENST00000541464 3581 ntTSL 2 BASIC15.23■□□□□ 0.03
LIG3P49916 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
LIG3P49916 ZNF519-206ENST00000589498 2117 ntTSL 2 BASIC15.23■□□□□ 0.03
LIG3P49916 SRPRB-201ENST00000466490 2827 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
LIG3P49916 RIC1-204ENST00000418622 6658 ntTSL 5 BASIC15.23■□□□□ 0.03
LIG3P49916 KDELR1-201ENST00000330720 1557 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LIG3P49916 SLC52A1-203ENST00000512825 2989 ntTSL 2 BASIC15.23■□□□□ 0.03
LIG3P49916 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
LIG3P49916 ELN-209ENST00000380576 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
LIG3P49916 FIBCD1-204ENST00000448616 3119 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
LIG3P49916 PRKCB-201ENST00000303531 7969 ntAPPRIS P4 TSL 1 (best) BASIC15.23■□□□□ 0.03
LIG3P49916 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
LIG3P49916 ZNF274-210ENST00000610905 2559 ntAPPRIS P4 TSL 5 BASIC15.23■□□□□ 0.03
LIG3P49916 DENND1B-211ENST00000620048 8378 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
LIG3P49916 MATN1-AS1-201ENST00000414532 3925 ntTSL 2 BASIC15.23■□□□□ 0.03
LIG3P49916 UMODL1-206ENST00000408989 5262 ntAPPRIS P4 TSL 1 (best) BASIC15.23■□□□□ 0.03
LIG3P49916 ARHGAP4-201ENST00000350060 3235 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
LIG3P49916 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LIG3P49916 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LIG3P49916 PGBD2-202ENST00000355360 2879 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
LIG3P49916 NLGN3-201ENST00000358741 3046 ntAPPRIS P4 TSL 5 BASIC15.22■□□□□ 0.03
LIG3P49916 PIK3R6-204ENST00000619866 3041 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
LIG3P49916 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
LIG3P49916 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
LIG3P49916 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
LIG3P49916 PEG13-201ENST00000631594 5667 ntBASIC15.22■□□□□ 0.03
LIG3P49916 GPA33-201ENST00000367868 2802 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LIG3P49916 AC012508.2-201ENST00000567613 1472 ntBASIC15.22■□□□□ 0.03
LIG3P49916 AP000845.1-201ENST00000581677 2131 ntBASIC15.22■□□□□ 0.03
LIG3P49916 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC15.22■□□□□ 0.03
LIG3P49916 ICOSLG-202ENST00000400377 2907 ntTSL 2 BASIC15.22■□□□□ 0.03
LIG3P49916 APLP2-201ENST00000263574 3727 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
LIG3P49916 ALOX15B-202ENST00000380183 2739 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LIG3P49916 ZBTB49-201ENST00000337872 2889 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 74.6 ms