Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 GAP43-202ENST00000393780 1901 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
CDX1P47902 INTS5-201ENST00000330574 3285 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
CDX1P47902 TMBIM6-203ENST00000423828 3254 ntAPPRIS ALT2 TSL 2 BASIC11.86□□□□□ -0.51
CDX1P47902 VWA8-201ENST00000281496 3475 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
CDX1P47902 CCDC126-202ENST00000409765 2324 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
CDX1P47902 IRF2BPL-201ENST00000238647 4157 ntAPPRIS P1 BASIC11.86□□□□□ -0.51
CDX1P47902 TCTN2-202ENST00000426174 2513 ntAPPRIS ALT2 TSL 2 BASIC11.86□□□□□ -0.51
CDX1P47902 ANKRD30B-202ENST00000358984 4359 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
CDX1P47902 HLA-E-201ENST00000376630 2601 ntAPPRIS P1 BASIC11.86□□□□□ -0.51
CDX1P47902 ADGRG2-207ENST00000379869 4768 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
CDX1P47902 RBM15-202ENST00000487146 3316 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
CDX1P47902 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
CDX1P47902 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
CDX1P47902 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC11.86□□□□□ -0.51
CDX1P47902 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC11.86□□□□□ -0.51
CDX1P47902 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
CDX1P47902 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
CDX1P47902 CNN2P8-201ENST00000421872 913 ntBASIC11.86□□□□□ -0.51
CDX1P47902 USB1-202ENST00000423271 1217 ntTSL 2 BASIC11.86□□□□□ -0.51
CDX1P47902 SNX29P1-201ENST00000548357 1007 ntBASIC11.86□□□□□ -0.51
CDX1P47902 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC11.86□□□□□ -0.51
CDX1P47902 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC11.86□□□□□ -0.51
CDX1P47902 RHOXF1P1-202ENST00000635473 501 ntBASIC11.86□□□□□ -0.51
CDX1P47902 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
CDX1P47902 DCUN1D4-201ENST00000334635 4312 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
CDX1P47902 TRPA1-201ENST00000262209 5223 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
CDX1P47902 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
CDX1P47902 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
CDX1P47902 ACE3P-201ENST00000423435 1973 ntBASIC11.86□□□□□ -0.51
CDX1P47902 NUDT16-202ENST00000521288 6108 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
CDX1P47902 LPO-204ENST00000543544 2350 ntTSL 2 BASIC11.86□□□□□ -0.51
CDX1P47902 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC11.86□□□□□ -0.51
CDX1P47902 UBE3A-228ENST00000638155 9131 ntAPPRIS P3 TSL 5 BASIC11.86□□□□□ -0.51
CDX1P47902 CELF1-214ENST00000531165 3650 ntTSL 2 BASIC11.86□□□□□ -0.51
CDX1P47902 LCOR-203ENST00000371097 4852 ntAPPRIS P3 TSL 1 (best) BASIC11.86□□□□□ -0.51
CDX1P47902 CTBP1-AS2-206ENST00000581398 5652 ntBASIC11.86□□□□□ -0.51
CDX1P47902 AL365181.3-201ENST00000605886 3222 ntBASIC11.86□□□□□ -0.51
CDX1P47902 IGHG1-202ENST00000390548 2619 ntAPPRIS P5 BASIC11.86□□□□□ -0.51
CDX1P47902 SLC8A3-205ENST00000394330 2622 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
CDX1P47902 HSPA1L-201ENST00000375654 2544 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
CDX1P47902 ATG9A-204ENST00000409422 2512 ntTSL 5 BASIC11.86□□□□□ -0.51
CDX1P47902 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
CDX1P47902 AC241585.2-201ENST00000578899 2307 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
CDX1P47902 EWSAT1-201ENST00000415504 2214 ntTSL 2 BASIC11.86□□□□□ -0.51
CDX1P47902 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
CDX1P47902 KIF12-201ENST00000374118 2001 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
CDX1P47902 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
CDX1P47902 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
CDX1P47902 LRRC59-203ENST00000576448 1531 ntBASIC11.86□□□□□ -0.51
CDX1P47902 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
CDX1P47902 COL2A1-201ENST00000337299 4257 ntAPPRIS P3 TSL 1 (best) BASIC11.86□□□□□ -0.51
CDX1P47902 EMP1-211ENST00000544053 1436 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
CDX1P47902 KIAA0319-201ENST00000378214 6802 ntAPPRIS P3 TSL 1 (best) BASIC11.86□□□□□ -0.51
CDX1P47902 SAMD4A-202ENST00000392067 6833 ntAPPRIS P1 TSL 2 BASIC11.86□□□□□ -0.51
CDX1P47902 PCDHA11-201ENST00000398640 6115 ntAPPRIS P3 TSL 1 (best) BASIC11.85□□□□□ -0.51
CDX1P47902 AC016738.1-201ENST00000452364 3485 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
CDX1P47902 UMODL1-204ENST00000400427 5442 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
CDX1P47902 RAB18-207ENST00000535776 4811 ntTSL 2 BASIC11.85□□□□□ -0.51
CDX1P47902 TP73-211ENST00000604074 4806 ntTSL 5 BASIC11.85□□□□□ -0.51
CDX1P47902 FAM189A1-201ENST00000261275 4705 ntAPPRIS P1 TSL 5 BASIC11.85□□□□□ -0.51
CDX1P47902 SELENON-201ENST00000354177 4227 ntAPPRIS ALT2 TSL 5 BASIC11.85□□□□□ -0.51
CDX1P47902 SUOX-208ENST00000548274 2352 ntAPPRIS P1 TSL 5 BASIC11.85□□□□□ -0.51
CDX1P47902 ACADM-201ENST00000370834 2172 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
CDX1P47902 RAB42-201ENST00000373826 1950 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
CDX1P47902 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC11.85□□□□□ -0.51
CDX1P47902 AC007240.1-201ENST00000641498 1996 ntAPPRIS P1 BASIC11.85□□□□□ -0.51
CDX1P47902 AC022007.1-201ENST00000383808 1897 ntTSL 2 BASIC11.85□□□□□ -0.51
CDX1P47902 ADGRG3-201ENST00000333493 2728 ntAPPRIS P3 TSL 1 (best) BASIC11.85□□□□□ -0.51
CDX1P47902 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC11.85□□□□□ -0.51
CDX1P47902 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC11.85□□□□□ -0.51
CDX1P47902 TNS2-219ENST00000552570 4714 ntAPPRIS ALT2 TSL 5 BASIC11.85□□□□□ -0.51
CDX1P47902 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC11.85□□□□□ -0.51
CDX1P47902 ZBTB45P1-201ENST00000452761 1456 ntBASIC11.85□□□□□ -0.51
CDX1P47902 AC011298.1-201ENST00000407635 3398 ntTSL 2 BASIC11.85□□□□□ -0.51
CDX1P47902 CSF1-201ENST00000329608 4210 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
CDX1P47902 SLC26A6-202ENST00000337000 2317 ntTSL 2 BASIC11.85□□□□□ -0.51
CDX1P47902 KIF3C-202ENST00000405914 3180 ntAPPRIS P1 TSL 5 BASIC11.85□□□□□ -0.51
CDX1P47902 ASH2L-201ENST00000343823 3090 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
CDX1P47902 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
CDX1P47902 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
CDX1P47902 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC11.85□□□□□ -0.51
CDX1P47902 RNU1-114P-201ENST00000365297 166 ntBASIC11.85□□□□□ -0.51
CDX1P47902 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
CDX1P47902 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC11.85□□□□□ -0.51
CDX1P47902 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC11.85□□□□□ -0.51
CDX1P47902 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC11.85□□□□□ -0.51
CDX1P47902 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
CDX1P47902 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC11.85□□□□□ -0.51
CDX1P47902 GPR35-205ENST00000438013 3821 ntAPPRIS P3 BASIC11.85□□□□□ -0.51
CDX1P47902 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC11.85□□□□□ -0.51
CDX1P47902 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC11.85□□□□□ -0.51
CDX1P47902 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
CDX1P47902 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC11.85□□□□□ -0.51
CDX1P47902 AC119751.2-201ENST00000504529 210 ntBASIC11.85□□□□□ -0.51
CDX1P47902 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC11.85□□□□□ -0.51
CDX1P47902 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
CDX1P47902 RPL8-205ENST00000527914 551 ntTSL 3 BASIC11.85□□□□□ -0.51
CDX1P47902 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC11.85□□□□□ -0.51
CDX1P47902 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC11.85□□□□□ -0.51
CDX1P47902 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC11.85□□□□□ -0.51
Retrieved 100 of 98,524 protein–RNA pairs in 48.6 ms