Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 LINC00665-205ENST00000585356 1557 ntTSL 2 BASIC13.23□□□□□ -0.29
RFC3P40938 SLC27A4-201ENST00000300456 3028 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
RFC3P40938 MYH11-201ENST00000300036 6029 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
RFC3P40938 DMPK-219ENST00000600757 3357 ntTSL 2 BASIC13.23□□□□□ -0.29
RFC3P40938 SDR42E2-201ENST00000602312 2630 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
RFC3P40938 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC13.23□□□□□ -0.29
RFC3P40938 OFD1-204ENST00000398395 3307 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
RFC3P40938 SIDT1-201ENST00000264852 5080 ntAPPRIS P1 TSL 2 BASIC13.22□□□□□ -0.29
RFC3P40938 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
RFC3P40938 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
RFC3P40938 KHSRPP1-201ENST00000427983 1768 ntBASIC13.22□□□□□ -0.29
RFC3P40938 SRPX-205ENST00000538295 1780 ntAPPRIS ALT2 TSL 2 BASIC13.22□□□□□ -0.29
RFC3P40938 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC13.22□□□□□ -0.29
RFC3P40938 FGD5P1-202ENST00000614866 2498 ntBASIC13.22□□□□□ -0.29
RFC3P40938 ADGRB2-205ENST00000398547 4857 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
RFC3P40938 WDR24-201ENST00000248142 2763 ntTSL 5 BASIC13.22□□□□□ -0.29
RFC3P40938 TBC1D1-214ENST00000508802 4119 ntTSL 2 BASIC13.22□□□□□ -0.29
RFC3P40938 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
RFC3P40938 NEDD4L-238ENST00000635997 4402 ntTSL 5 BASIC13.22□□□□□ -0.29
RFC3P40938 CICP17-201ENST00000418553 2377 ntBASIC13.22□□□□□ -0.29
RFC3P40938 TLL1-201ENST00000061240 6708 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
RFC3P40938 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
RFC3P40938 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
RFC3P40938 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
RFC3P40938 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
RFC3P40938 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
RFC3P40938 PDLIM2-201ENST00000265810 4592 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
RFC3P40938 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
RFC3P40938 LHX6-207ENST00000541397 2942 ntTSL 2 BASIC13.22□□□□□ -0.29
RFC3P40938 RFX2-222ENST00000592546 2578 ntAPPRIS ALT1 TSL 2 BASIC13.22□□□□□ -0.29
RFC3P40938 RAB18-207ENST00000535776 4811 ntTSL 2 BASIC13.22□□□□□ -0.29
RFC3P40938 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC13.22□□□□□ -0.29
RFC3P40938 CALCA-203ENST00000396372 581 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
RFC3P40938 CAMKMT-203ENST00000403853 1114 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
RFC3P40938 AL606491.1-201ENST00000412797 483 ntTSL 3 BASIC13.22□□□□□ -0.29
RFC3P40938 AL136361.1-201ENST00000435429 506 ntTSL 3 BASIC13.22□□□□□ -0.29
RFC3P40938 OR2R1P-201ENST00000441404 914 ntBASIC13.22□□□□□ -0.29
RFC3P40938 LINC02028-203ENST00000443776 453 ntTSL 3 BASIC13.22□□□□□ -0.29
RFC3P40938 ZNF529-AS1-201ENST00000448373 1004 ntTSL 2 BASIC13.22□□□□□ -0.29
RFC3P40938 SIRT3-210ENST00000529382 1225 ntTSL 2 BASIC13.22□□□□□ -0.29
RFC3P40938 AL132709.1-203ENST00000555103 569 ntTSL 4 BASIC13.22□□□□□ -0.29
RFC3P40938 ANP32A-210ENST00000560303 724 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
RFC3P40938 LINC01229-204ENST00000568751 720 ntTSL 3 BASIC13.22□□□□□ -0.29
RFC3P40938 AC145207.3-201ENST00000576784 529 ntTSL 5 BASIC13.22□□□□□ -0.29
RFC3P40938 AC010754.1-201ENST00000582300 1061 ntTSL 3 BASIC13.22□□□□□ -0.29
RFC3P40938 MIR4754-201ENST00000582477 89 ntBASIC13.22□□□□□ -0.29
RFC3P40938 ZFR2-208ENST00000592398 532 ntTSL 5 BASIC13.22□□□□□ -0.29
RFC3P40938 IGFLR1-211ENST00000592889 782 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
RFC3P40938 MBD3L2B-201ENST00000636986 860 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
RFC3P40938 UVRAG-201ENST00000356136 4123 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
RFC3P40938 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC13.22□□□□□ -0.29
RFC3P40938 MBNL1-205ENST00000355460 5941 ntAPPRIS ALT1 TSL 1 (best) BASIC13.22□□□□□ -0.29
RFC3P40938 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
RFC3P40938 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC13.22□□□□□ -0.29
RFC3P40938 APP-205ENST00000358918 2366 ntTSL 5 BASIC13.22□□□□□ -0.29
RFC3P40938 CYP1B1-AS1-201ENST00000413828 1781 ntTSL 5 BASIC13.22□□□□□ -0.29
RFC3P40938 GPI-205ENST00000586425 1799 ntTSL 5 BASIC13.22□□□□□ -0.29
RFC3P40938 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
RFC3P40938 FP565260.6-203ENST00000620015 1435 ntTSL 3 BASIC13.22□□□□□ -0.29
RFC3P40938 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
RFC3P40938 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC13.22□□□□□ -0.29
RFC3P40938 NLRP13-201ENST00000342929 3132 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
RFC3P40938 EVL-201ENST00000392920 1978 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.29
RFC3P40938 ZNF559-202ENST00000393883 5095 ntAPPRIS P3 TSL 2 BASIC13.21□□□□□ -0.29
RFC3P40938 KHNYN-201ENST00000251343 6725 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
RFC3P40938 KCNN3-202ENST00000358505 1658 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
RFC3P40938 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC13.21□□□□□ -0.29
RFC3P40938 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.29
RFC3P40938 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC13.21□□□□□ -0.29
RFC3P40938 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC13.21□□□□□ -0.29
RFC3P40938 SLC35C2-213ENST00000543605 5740 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
RFC3P40938 NOP14-AS1-201ENST00000503709 1616 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
RFC3P40938 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.29
RFC3P40938 PTPRU-205ENST00000460170 5337 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
RFC3P40938 AC104667.2-202ENST00000452801 1301 ntTSL 2 BASIC13.21□□□□□ -0.29
RFC3P40938 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
RFC3P40938 EIF5-202ENST00000392715 3417 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
RFC3P40938 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC13.21□□□□□ -0.29
RFC3P40938 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
RFC3P40938 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC13.21□□□□□ -0.29
RFC3P40938 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.29
RFC3P40938 AL591684.1-201ENST00000434533 234 ntTSL 5 BASIC13.21□□□□□ -0.29
RFC3P40938 XBP1P1-201ENST00000436573 652 ntBASIC13.21□□□□□ -0.29
RFC3P40938 FGFR3P1-201ENST00000449999 601 ntBASIC13.21□□□□□ -0.29
RFC3P40938 AL136982.2-201ENST00000451760 234 ntTSL 5 BASIC13.21□□□□□ -0.29
RFC3P40938 ATP6V1G2-210ENST00000483251 662 ntTSL 3 BASIC13.21□□□□□ -0.29
RFC3P40938 AC078852.2-201ENST00000504748 527 ntTSL 5 BASIC13.21□□□□□ -0.29
RFC3P40938 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC13.21□□□□□ -0.29
RFC3P40938 MIR4706-201ENST00000582134 82 ntBASIC13.21□□□□□ -0.29
RFC3P40938 ELOF1-202ENST00000586120 658 ntAPPRIS P1 TSL 3 BASIC13.21□□□□□ -0.29
RFC3P40938 AC090386.1-202ENST00000586610 469 ntTSL 3 BASIC13.21□□□□□ -0.29
RFC3P40938 IMPA2-207ENST00000588927 787 ntTSL 5 BASIC13.21□□□□□ -0.29
RFC3P40938 AC005779.2-201ENST00000593083 550 ntAPPRIS P1 TSL 4 BASIC13.21□□□□□ -0.29
RFC3P40938 SRD5A3-AS1-211ENST00000599135 737 ntTSL 5 BASIC13.21□□□□□ -0.29
RFC3P40938 SIRT2-219ENST00000613542 1170 ntTSL 5 BASIC13.21□□□□□ -0.29
RFC3P40938 Metazoa_SRP.69-201ENST00000615730 281 ntBASIC13.21□□□□□ -0.29
RFC3P40938 AP001043.1-205ENST00000623098 1033 ntTSL 5 BASIC13.21□□□□□ -0.29
RFC3P40938 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC13.21□□□□□ -0.29
RFC3P40938 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
RFC3P40938 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC13.21□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms