Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 TMBIM6-217ENST00000549385 2771 ntAPPRIS P3 TSL 5 BASIC16.33■□□□□ 0.2
SMARCA1P28370 CTSS-202ENST00000448301 1421 ntTSL 2 BASIC16.33■□□□□ 0.2
SMARCA1P28370 KRT8P43-201ENST00000406052 1458 ntBASIC16.33■□□□□ 0.2
SMARCA1P28370 OXNAD1-202ENST00000435829 1643 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
SMARCA1P28370 METTL17-201ENST00000339374 1749 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
SMARCA1P28370 AC010255.3-203ENST00000509403 1727 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
SMARCA1P28370 TTLL10-AS1-201ENST00000379317 3532 ntTSL 2 BASIC16.33■□□□□ 0.2
SMARCA1P28370 AC093797.1-201ENST00000411847 1789 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
SMARCA1P28370 ADAT1-201ENST00000307921 1869 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SMARCA1P28370 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC16.33■□□□□ 0.2
SMARCA1P28370 AC104452.1-203ENST00000636166 2266 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
SMARCA1P28370 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
SMARCA1P28370 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC16.33■□□□□ 0.2
SMARCA1P28370 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SMARCA1P28370 HSD17B4-215ENST00000510025 2589 ntTSL 2 BASIC16.33■□□□□ 0.2
SMARCA1P28370 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SMARCA1P28370 NFATC4-226ENST00000556279 2924 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
SMARCA1P28370 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC16.32■□□□□ 0.2
SMARCA1P28370 PODN-207ENST00000618387 3065 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
SMARCA1P28370 SLC25A31-201ENST00000281154 1841 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SMARCA1P28370 ZDHHC8-201ENST00000320602 3072 ntTSL 5 BASIC16.32■□□□□ 0.2
SMARCA1P28370 PRR30-201ENST00000335524 2008 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
SMARCA1P28370 CDK11A-201ENST00000356200 2653 ntTSL 5 BASIC16.32■□□□□ 0.2
SMARCA1P28370 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC16.32■□□□□ 0.2
SMARCA1P28370 CREB3L4-202ENST00000368600 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
SMARCA1P28370 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
SMARCA1P28370 GAD1-203ENST00000375272 1252 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
SMARCA1P28370 GGACT-201ENST00000376250 2804 ntAPPRIS P1 TSL 3 BASIC16.32■□□□□ 0.2
SMARCA1P28370 HERPUD1-203ENST00000379792 1782 ntTSL 5 BASIC16.32■□□□□ 0.2
SMARCA1P28370 HLA-DQB1-202ENST00000399079 1501 ntBASIC16.32■□□□□ 0.2
SMARCA1P28370 KCTD18-202ENST00000409157 2556 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SMARCA1P28370 LINC00475-202ENST00000416438 2506 ntTSL 2 BASIC16.32■□□□□ 0.2
SMARCA1P28370 BMS1P17-203ENST00000444357 552 ntTSL 4 BASIC16.32■□□□□ 0.2
SMARCA1P28370 LY6G6C-202ENST00000495859 937 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
SMARCA1P28370 DACT3-AS1-201ENST00000500689 1304 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
SMARCA1P28370 RBM4B-206ENST00000531036 1646 ntTSL 2 BASIC16.32■□□□□ 0.2
SMARCA1P28370 TPM1-223ENST00000560445 485 ntTSL 3 BASIC16.32■□□□□ 0.2
SMARCA1P28370 AL031282.1-201ENST00000577672 409 ntTSL 3 BASIC16.32■□□□□ 0.2
SMARCA1P28370 AC079336.4-201ENST00000584219 408 ntTSL 2 BASIC16.32■□□□□ 0.2
SMARCA1P28370 BCL2L12-204ENST00000594157 620 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
SMARCA1P28370 RPL18A-205ENST00000600147 1391 ntTSL 5 BASIC16.32■□□□□ 0.2
SMARCA1P28370 AL359881.3-201ENST00000602640 1721 ntBASIC16.32■□□□□ 0.2
SMARCA1P28370 AC084346.2-201ENST00000607097 949 ntBASIC16.32■□□□□ 0.2
SMARCA1P28370 BMS1P22-203ENST00000609679 552 ntTSL 4 BASIC16.32■□□□□ 0.2
SMARCA1P28370 AC103691.2-201ENST00000618824 433 ntBASIC16.32■□□□□ 0.2
SMARCA1P28370 AC007718.1-201ENST00000621078 280 ntBASIC16.32■□□□□ 0.2
SMARCA1P28370 SNRPA1-216ENST00000626000 539 ntTSL 5 BASIC16.32■□□□□ 0.2
SMARCA1P28370 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SMARCA1P28370 FOXD4L5-201ENST00000377420 3109 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
SMARCA1P28370 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SMARCA1P28370 DBNDD1-203ENST00000392973 2689 ntTSL 2 BASIC16.32■□□□□ 0.2
SMARCA1P28370 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SMARCA1P28370 GLB1L-202ENST00000392089 2574 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SMARCA1P28370 ACAD8-201ENST00000281182 2249 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SMARCA1P28370 CSRP1-202ENST00000367306 2129 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
SMARCA1P28370 PGLYRP4-202ENST00000368739 2116 ntAPPRIS ALT1 TSL 5 BASIC16.31■□□□□ 0.2
SMARCA1P28370 GOLGA8IP-202ENST00000611635 2100 ntBASIC16.31■□□□□ 0.2
SMARCA1P28370 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
SMARCA1P28370 HIST2H2BF-201ENST00000369167 1954 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
SMARCA1P28370 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC16.31■□□□□ 0.2
SMARCA1P28370 SARS-202ENST00000369923 1882 ntTSL 5 BASIC16.31■□□□□ 0.2
SMARCA1P28370 AAMP-204ENST00000444053 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SMARCA1P28370 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
SMARCA1P28370 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SMARCA1P28370 TAGLN2-203ENST00000368097 1604 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SMARCA1P28370 RPGRIP1-210ENST00000556336 2955 ntTSL 5 BASIC16.31■□□□□ 0.2
SMARCA1P28370 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
SMARCA1P28370 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
SMARCA1P28370 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SMARCA1P28370 AC245100.1-201ENST00000452996 1331 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SMARCA1P28370 TEKT4P2-202ENST00000559466 1312 ntBASIC16.31■□□□□ 0.2
SMARCA1P28370 RPAIN-201ENST00000327154 815 ntTSL 2 BASIC16.31■□□□□ 0.2
SMARCA1P28370 GSG1L-201ENST00000380897 1173 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SMARCA1P28370 AL137058.1-201ENST00000418237 673 ntTSL 5 BASIC16.31■□□□□ 0.2
SMARCA1P28370 Z82214.1-201ENST00000419643 988 ntTSL 3 BASIC16.31■□□□□ 0.2
SMARCA1P28370 AL513211.1-201ENST00000429053 483 ntTSL 3 BASIC16.31■□□□□ 0.2
SMARCA1P28370 EEF1DP6-201ENST00000449232 372 ntBASIC16.31■□□□□ 0.2
SMARCA1P28370 FBXO24-204ENST00000465843 957 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SMARCA1P28370 SRSF10-211ENST00000484146 1089 ntTSL 2 BASIC16.31■□□□□ 0.2
SMARCA1P28370 APOC1P1-201ENST00000507983 630 ntTSL 4 BASIC16.31■□□□□ 0.2
SMARCA1P28370 IGLV3-15-201ENST00000518356 244 ntBASIC16.31■□□□□ 0.2
SMARCA1P28370 AC022182.2-201ENST00000525556 859 ntTSL 2 BASIC16.31■□□□□ 0.2
SMARCA1P28370 AC138230.1-201ENST00000525893 664 ntTSL 5 BASIC16.31■□□□□ 0.2
SMARCA1P28370 AHNAK-205ENST00000530124 701 ntAPPRIS ALT2 TSL 3 BASIC16.31■□□□□ 0.2
SMARCA1P28370 C14orf132-202ENST00000553782 536 ntTSL 4 BASIC16.31■□□□□ 0.2
SMARCA1P28370 AC009163.3-201ENST00000563554 852 ntTSL 3 BASIC16.31■□□□□ 0.2
SMARCA1P28370 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
SMARCA1P28370 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SMARCA1P28370 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC16.31■□□□□ 0.2
SMARCA1P28370 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SMARCA1P28370 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
SMARCA1P28370 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SMARCA1P28370 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
SMARCA1P28370 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
SMARCA1P28370 FAM120A-202ENST00000375389 3585 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SMARCA1P28370 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC16.3■□□□□ 0.2
SMARCA1P28370 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SMARCA1P28370 UBE3C-202ENST00000389103 1626 ntTSL 5 BASIC16.3■□□□□ 0.2
SMARCA1P28370 POU2F2-204ENST00000526816 3218 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
SMARCA1P28370 SLC46A3-201ENST00000266943 3173 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms