Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 PPDPF-202ENST00000370179 868 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
BDNFP23560 GSG1L-201ENST00000380897 1173 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
BDNFP23560 MIR557-201ENST00000385239 98 ntBASIC15.11■□□□□ 0.01
BDNFP23560 PUS10-202ENST00000398658 1227 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
BDNFP23560 AL807761.2-201ENST00000422849 729 ntBASIC15.11■□□□□ 0.01
BDNFP23560 MAGEA5-201ENST00000446757 942 ntBASIC15.11■□□□□ 0.01
BDNFP23560 AC114947.1-202ENST00000514136 344 ntBASIC15.11■□□□□ 0.01
BDNFP23560 PCMTD1-207ENST00000522514 1287 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
BDNFP23560 ERVK13-1-204ENST00000566343 567 ntTSL 4 BASIC15.11■□□□□ 0.01
BDNFP23560 TBC1D16-203ENST00000570373 961 ntTSL 5 BASIC15.11■□□□□ 0.01
BDNFP23560 AL031282.1-201ENST00000577672 409 ntTSL 3 BASIC15.11■□□□□ 0.01
BDNFP23560 SIGLEC18P-201ENST00000602271 909 ntBASIC15.11■□□□□ 0.01
BDNFP23560 AC007326.1-201ENST00000604539 458 ntBASIC15.11■□□□□ 0.01
BDNFP23560 CUTA-215ENST00000611509 1199 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
BDNFP23560 CNOT7-213ENST00000628418 432 ntTSL 5 BASIC15.11■□□□□ 0.01
BDNFP23560 PPL-201ENST00000345988 6238 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
BDNFP23560 TRIM67-201ENST00000366653 3936 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
BDNFP23560 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
BDNFP23560 JARID2-201ENST00000341776 5755 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
BDNFP23560 UHRF1BP1L-201ENST00000279907 5168 ntAPPRIS P4 TSL 1 (best) BASIC15.11■□□□□ 0.01
BDNFP23560 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
BDNFP23560 C12orf73-201ENST00000378090 1738 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
BDNFP23560 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
BDNFP23560 KIAA2026-201ENST00000381461 6884 ntTSL 5 BASIC15.11■□□□□ 0.01
BDNFP23560 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC15.11■□□□□ 0.01
BDNFP23560 PIGT-203ENST00000372689 1971 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
BDNFP23560 C2orf68-201ENST00000306336 2837 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
BDNFP23560 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
BDNFP23560 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
BDNFP23560 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
BDNFP23560 BCL2L13-206ENST00000399782 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
BDNFP23560 SNHG1-213ENST00000540725 1374 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
BDNFP23560 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
BDNFP23560 DHRS4-AS1-204ENST00000555045 1848 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
BDNFP23560 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
BDNFP23560 FOXD4L5-201ENST00000377420 3109 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
BDNFP23560 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC15.1■□□□□ 0.01
BDNFP23560 ACSM2A-202ENST00000396104 2734 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
BDNFP23560 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
BDNFP23560 LINC01815-202ENST00000641468 1409 ntBASIC15.1■□□□□ 0.01
BDNFP23560 FARP2-201ENST00000264042 4051 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
BDNFP23560 ADRB2-201ENST00000305988 3443 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
BDNFP23560 SLC37A4-201ENST00000330775 2102 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
BDNFP23560 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
BDNFP23560 SLCO2B1-217ENST00000532236 2593 ntAPPRIS ALT2 TSL 2 BASIC15.1■□□□□ 0.01
BDNFP23560 AKR1C2-202ENST00000421196 1481 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
BDNFP23560 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC15.1■□□□□ 0.01
BDNFP23560 SLC22A15-202ENST00000369503 4720 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
BDNFP23560 BOLA3-201ENST00000295326 444 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
BDNFP23560 RPAIN-201ENST00000327154 815 ntTSL 2 BASIC15.1■□□□□ 0.01
BDNFP23560 NACA-202ENST00000393891 1059 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
BDNFP23560 TMEM243-202ENST00000423734 601 ntTSL 2 BASIC15.1■□□□□ 0.01
BDNFP23560 BX276092.5-201ENST00000439926 886 ntTSL 5 BASIC15.1■□□□□ 0.01
BDNFP23560 UPK1A-AS1-201ENST00000443196 795 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
BDNFP23560 PPP2R1A-209ENST00000477989 444 ntTSL 3 BASIC15.1■□□□□ 0.01
BDNFP23560 LRRC75A-AS1-209ENST00000481027 1016 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
BDNFP23560 AC019193.1-201ENST00000506678 823 ntBASIC15.1■□□□□ 0.01
BDNFP23560 FAM167A-AS1-202ENST00000533578 1222 ntTSL 2 BASIC15.1■□□□□ 0.01
BDNFP23560 SLIRP-210ENST00000557431 725 ntTSL 2 BASIC15.1■□□□□ 0.01
BDNFP23560 AC133919.1-201ENST00000562203 416 ntTSL 3 BASIC15.1■□□□□ 0.01
BDNFP23560 LRRC75A-AS1-226ENST00000582911 879 ntTSL 5 BASIC15.1■□□□□ 0.01
BDNFP23560 SIRT2-219ENST00000613542 1170 ntTSL 5 BASIC15.1■□□□□ 0.01
BDNFP23560 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
BDNFP23560 SLC9A3P3-201ENST00000457608 2229 ntBASIC15.1■□□□□ 0.01
BDNFP23560 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC15.1■□□□□ 0.01
BDNFP23560 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
BDNFP23560 CPN2-202ENST00000429275 2008 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
BDNFP23560 ZNF460-202ENST00000537645 2037 ntTSL 2 BASIC15.1■□□□□ 0.01
BDNFP23560 PCBP1-AS1-214ENST00000419542 1309 ntTSL 5 BASIC15.1■□□□□ 0.01
BDNFP23560 ILK-201ENST00000299421 1802 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
BDNFP23560 COG3-206ENST00000617493 1809 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
BDNFP23560 CDH16-202ENST00000394055 2821 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
BDNFP23560 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
BDNFP23560 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
BDNFP23560 PEX5-207ENST00000455147 2689 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
BDNFP23560 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
BDNFP23560 KIF17-201ENST00000247986 3969 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
BDNFP23560 AC008894.2-201ENST00000597983 2987 ntTSL 2 BASIC15.09■□□□□ 0.01
BDNFP23560 SH3GLB2-205ENST00000416629 1415 ntTSL 5 BASIC15.09■□□□□ 0.01
BDNFP23560 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC15.09■□□□□ 0.01
BDNFP23560 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC15.09■□□□□ 0.01
BDNFP23560 LINC01029-204ENST00000583106 1465 ntTSL 5 BASIC15.09■□□□□ 0.01
BDNFP23560 PEX26-205ENST00000610387 3924 ntTSL 5 BASIC15.09■□□□□ 0.01
BDNFP23560 SLC6A2-205ENST00000566163 1759 ntTSL 5 BASIC15.09■□□□□ 0.01
BDNFP23560 TACC3-212ENST00000612220 1756 ntTSL 5 BASIC15.09■□□□□ 0.01
BDNFP23560 FES-202ENST00000394300 2302 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
BDNFP23560 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
BDNFP23560 MROH1-207ENST00000528919 5234 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
BDNFP23560 RASSF3-202ENST00000336061 1030 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
BDNFP23560 IGHV4-39-201ENST00000390619 425 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
BDNFP23560 TSPO-203ENST00000396265 1075 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
BDNFP23560 OSM-202ENST00000403389 1000 ntAPPRIS ALT2 TSL 3 BASIC15.09■□□□□ 0.01
BDNFP23560 AC073869.2-201ENST00000417338 1026 ntBASIC15.09■□□□□ 0.01
BDNFP23560 LINC02028-203ENST00000443776 453 ntTSL 3 BASIC15.09■□□□□ 0.01
BDNFP23560 MYL7-209ENST00000458240 791 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
BDNFP23560 FBXO24-204ENST00000465843 957 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
BDNFP23560 NEU3-205ENST00000531619 582 ntTSL 5 BASIC15.09■□□□□ 0.01
BDNFP23560 CATSPERZ-203ENST00000539943 917 ntAPPRIS ALT2 TSL 2 BASIC15.09■□□□□ 0.01
BDNFP23560 AL512310.5-201ENST00000551999 515 ntBASIC15.09■□□□□ 0.01
BDNFP23560 LGALS3-204ENST00000554715 916 ntTSL 3 BASIC15.09■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 127.6 ms