Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 PRSS30P-202ENST00000475030 752 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
APOEP02649 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC15.1■□□□□ 0.01
APOEP02649 NAA40-206ENST00000542163 1035 ntTSL 2 BASIC15.1■□□□□ 0.01
APOEP02649 TGIF1-218ENST00000551402 1089 ntTSL 2 BASIC15.1■□□□□ 0.01
APOEP02649 SNORD3B-2-202ENST00000571722 791 ntBASIC15.1■□□□□ 0.01
APOEP02649 AL132994.2-201ENST00000603120 687 ntBASIC15.1■□□□□ 0.01
APOEP02649 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
APOEP02649 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
APOEP02649 ARHGEF7-201ENST00000218789 5233 ntTSL 5 BASIC15.1■□□□□ 0.01
APOEP02649 AC016397.2-201ENST00000624848 1985 ntBASIC15.1■□□□□ 0.01
APOEP02649 GNB1L-201ENST00000329517 6706 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
APOEP02649 MAP2K1-201ENST00000307102 3410 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
APOEP02649 STAB1-201ENST00000321725 7928 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
APOEP02649 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC15.1■□□□□ 0.01
APOEP02649 MSH5-201ENST00000375703 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
APOEP02649 RBFADN-204ENST00000568911 5187 ntTSL 2 BASIC15.1■□□□□ 0.01
APOEP02649 CLEC12A-AS1-201ENST00000420905 3956 ntTSL 2 BASIC15.1■□□□□ 0.01
APOEP02649 FXYD5-201ENST00000342879 1580 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
APOEP02649 ZNF691-206ENST00000372508 1577 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
APOEP02649 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
APOEP02649 CYP4F23P-201ENST00000593402 1579 ntBASIC15.1■□□□□ 0.01
APOEP02649 NOP14-203ENST00000416614 3538 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
APOEP02649 AC090505.1-201ENST00000430515 1834 ntBASIC15.1■□□□□ 0.01
APOEP02649 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC15.1■□□□□ 0.01
APOEP02649 FSD1L-206ENST00000481272 1804 ntTSL 2 BASIC15.1■□□□□ 0.01
APOEP02649 TDP2-201ENST00000341060 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
APOEP02649 SMTN-202ENST00000347557 3130 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
APOEP02649 COLEC11-203ENST00000382062 1633 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
APOEP02649 FAM98B-202ENST00000397609 4388 ntAPPRIS P2 TSL 5 BASIC15.1■□□□□ 0.01
APOEP02649 TIGD1-201ENST00000408957 2625 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
APOEP02649 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
APOEP02649 AC090515.2-201ENST00000500929 1396 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
APOEP02649 ADK-205ENST00000539909 1866 ntTSL 2 BASIC15.1■□□□□ 0.01
APOEP02649 NRXN1-222ENST00000625672 8113 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
APOEP02649 MAP3K4-204ENST00000392142 5490 ntAPPRIS P4 TSL 1 (best) BASIC15.1■□□□□ 0.01
APOEP02649 ARHGAP23P1-201ENST00000562773 1937 ntBASIC15.09■□□□□ 0.01
APOEP02649 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC15.09■□□□□ 0.01
APOEP02649 NPRL3-212ENST00000620134 3203 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
APOEP02649 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC15.09■□□□□ 0.01
APOEP02649 GAK-214ENST00000511163 4280 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
APOEP02649 SLC25A18-201ENST00000327451 2244 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
APOEP02649 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC15.09■□□□□ 0.01
APOEP02649 AC013472.1-203ENST00000380387 1966 ntTSL 4 BASIC15.09■□□□□ 0.01
APOEP02649 ZNF570-201ENST00000330173 5559 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
APOEP02649 IL17RD-203ENST00000463523 2348 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
APOEP02649 SPOCK3-202ENST00000357545 2936 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
APOEP02649 NDRG4-217ENST00000562999 2931 ntTSL 5 BASIC15.09■□□□□ 0.01
APOEP02649 TMBIM1-201ENST00000258412 2371 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
APOEP02649 HIST2H2AA3-201ENST00000369159 549 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
APOEP02649 C1orf159-201ENST00000379319 1097 ntAPPRIS P3 TSL 5 BASIC15.09■□□□□ 0.01
APOEP02649 CRCP-204ENST00000398684 492 ntTSL 2 BASIC15.09■□□□□ 0.01
APOEP02649 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
APOEP02649 AL008707.1-201ENST00000422498 534 ntBASIC15.09■□□□□ 0.01
APOEP02649 AC078875.1-201ENST00000431907 724 ntBASIC15.09■□□□□ 0.01
APOEP02649 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC15.09■□□□□ 0.01
APOEP02649 AKR7A2P1-201ENST00000460134 915 ntBASIC15.09■□□□□ 0.01
APOEP02649 PRSS30P-205ENST00000506153 699 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
APOEP02649 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC15.09■□□□□ 0.01
APOEP02649 AC009779.1-201ENST00000551138 283 ntBASIC15.09■□□□□ 0.01
APOEP02649 AC009088.2-201ENST00000564743 463 ntTSL 5 BASIC15.09■□□□□ 0.01
APOEP02649 FXYD6-217ENST00000584394 669 ntTSL 3 BASIC15.09■□□□□ 0.01
APOEP02649 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
APOEP02649 ALKBH7-202ENST00000596657 603 ntTSL 2 BASIC15.09■□□□□ 0.01
APOEP02649 HIST2H2AA4-201ENST00000607355 564 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
APOEP02649 AL445288.1-201ENST00000610846 654 ntTSL 4 BASIC15.09■□□□□ 0.01
APOEP02649 AC004706.3-207ENST00000634823 977 ntTSL 5 BASIC15.09■□□□□ 0.01
APOEP02649 CA12-201ENST00000178638 6413 ntAPPRIS P4 TSL 1 (best) BASIC15.09■□□□□ 0.01
APOEP02649 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
APOEP02649 LAP3-210ENST00000606142 1876 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
APOEP02649 AFDN-205ENST00000392108 6812 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
APOEP02649 SLCO6A1-207ENST00000513675 1611 ntTSL 2 BASIC15.09■□□□□ 0.01
APOEP02649 CARHSP1-220ENST00000619881 2849 ntAPPRIS P1 TSL 3 BASIC15.09■□□□□ 0.01
APOEP02649 NRP2-201ENST00000272849 5909 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
APOEP02649 GAP43-201ENST00000305124 1691 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
APOEP02649 ANKMY1-204ENST00000391987 3221 ntTSL 5 BASIC15.09■□□□□ 0.01
APOEP02649 MRC2-202ENST00000446119 3201 ntTSL 2 BASIC15.09■□□□□ 0.01
APOEP02649 SPECC1-202ENST00000395522 2982 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
APOEP02649 GMPPB-203ENST00000480687 6108 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
APOEP02649 MTMR9-201ENST00000221086 7481 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
APOEP02649 PLCXD2-201ENST00000393934 2063 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
APOEP02649 UMODL1-206ENST00000408989 5262 ntAPPRIS P4 TSL 1 (best) BASIC15.08■□□□□ 0.01
APOEP02649 VTI1B-204ENST00000554659 5351 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
APOEP02649 MSR1-201ENST00000262101 2132 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
APOEP02649 CSRP1-202ENST00000367306 2129 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0.01
APOEP02649 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0.01
APOEP02649 ZBED1-203ENST00000381223 4510 ntAPPRIS P1 TSL 2 BASIC15.08■□□□□ 0.01
APOEP02649 LAT2-205ENST00000460943 2527 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0.01
APOEP02649 SEMA3F-202ENST00000413852 3212 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
APOEP02649 FUK-202ENST00000378912 3925 ntTSL 2 BASIC15.08■□□□□ 0.01
APOEP02649 DUSP18-204ENST00000403268 2920 ntTSL 1 (best) BASIC15.08■□□□□ 0
APOEP02649 MROH2A-201ENST00000389758 5355 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
APOEP02649 ABCA2-203ENST00000371605 8151 ntAPPRIS ALT2 TSL 2 BASIC15.08■□□□□ 0
APOEP02649 SLC27A3-201ENST00000271857 3351 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
APOEP02649 CRCP-203ENST00000395326 3009 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
APOEP02649 ZBTB17-202ENST00000375743 2745 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
APOEP02649 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
APOEP02649 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC15.08■□□□□ 0
APOEP02649 KRTAP2-4-201ENST00000394015 764 ntAPPRIS P1 BASIC15.08■□□□□ 0
APOEP02649 ATP5J-205ENST00000400094 589 ntAPPRIS P1 TSL 2 BASIC15.08■□□□□ 0
APOEP02649 AC016700.1-201ENST00000429424 312 ntBASIC15.08■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 75.6 ms