Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC13.54□□□□□ -0.24
DEPDC4Q8N2C3 NOP2-220ENST00000545915 630 ntTSL 2 BASIC13.54□□□□□ -0.24
DEPDC4Q8N2C3 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
DEPDC4Q8N2C3 GPX4-206ENST00000588919 803 ntTSL 2 BASIC13.54□□□□□ -0.24
DEPDC4Q8N2C3 CU634019.7-201ENST00000624153 1185 ntBASIC13.54□□□□□ -0.24
DEPDC4Q8N2C3 FP236241.2-201ENST00000624906 1185 ntBASIC13.54□□□□□ -0.24
DEPDC4Q8N2C3 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
DEPDC4Q8N2C3 MIR193BHG-211ENST00000641433 5365 ntBASIC13.54□□□□□ -0.24
DEPDC4Q8N2C3 LINC02396-202ENST00000550636 2324 ntTSL 2 BASIC13.54□□□□□ -0.24
DEPDC4Q8N2C3 YTHDF3-209ENST00000617200 5076 ntTSL 5 BASIC13.54□□□□□ -0.24
DEPDC4Q8N2C3 LRRC8C-201ENST00000370454 7218 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
DEPDC4Q8N2C3 ANKRD36BP2-202ENST00000421951 1899 ntTSL 3 BASIC13.54□□□□□ -0.24
DEPDC4Q8N2C3 CCHCR1-203ENST00000396268 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
DEPDC4Q8N2C3 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC13.54□□□□□ -0.24
DEPDC4Q8N2C3 CATSPERE-201ENST00000366531 3038 ntAPPRIS ALT2 TSL 2 BASIC13.54□□□□□ -0.24
DEPDC4Q8N2C3 NUMB-216ENST00000555394 3037 ntAPPRIS ALT1 TSL 1 (best) BASIC13.54□□□□□ -0.24
DEPDC4Q8N2C3 AL136172.1-201ENST00000598590 1394 ntBASIC13.54□□□□□ -0.24
DEPDC4Q8N2C3 FOSB-212ENST00000592811 3089 ntTSL 2 BASIC13.54□□□□□ -0.24
DEPDC4Q8N2C3 ACADM-218ENST00000541113 2535 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
DEPDC4Q8N2C3 SLC9B2-202ENST00000394785 3126 ntAPPRIS P1 TSL 2 BASIC13.54□□□□□ -0.24
DEPDC4Q8N2C3 CLCNKA-202ENST00000375692 2581 ntAPPRIS ALT1 TSL 1 (best) BASIC13.54□□□□□ -0.24
DEPDC4Q8N2C3 SPDYE16-203ENST00000633306 2591 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
DEPDC4Q8N2C3 BRPF1-205ENST00000433861 4304 ntTSL 2 BASIC13.54□□□□□ -0.24
DEPDC4Q8N2C3 TOM1L2-214ENST00000581396 5595 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
DEPDC4Q8N2C3 HSPA8P5-201ENST00000456928 2069 ntBASIC13.54□□□□□ -0.24
DEPDC4Q8N2C3 AC004899.2-201ENST00000622993 3860 ntBASIC13.54□□□□□ -0.24
DEPDC4Q8N2C3 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
DEPDC4Q8N2C3 AC012435.1-201ENST00000563287 3385 ntTSL 2 BASIC13.54□□□□□ -0.24
DEPDC4Q8N2C3 MTUS1-204ENST00000381869 6256 ntTSL 5 BASIC13.53□□□□□ -0.24
DEPDC4Q8N2C3 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC13.53□□□□□ -0.24
DEPDC4Q8N2C3 DCST2-202ENST00000368424 2392 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
DEPDC4Q8N2C3 SP6-202ENST00000536300 3848 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
DEPDC4Q8N2C3 AGL-203ENST00000361915 7368 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
DEPDC4Q8N2C3 ATG13-215ENST00000529655 2566 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
DEPDC4Q8N2C3 HGNC:18790-201ENST00000397958 2650 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
DEPDC4Q8N2C3 SH3TC2-202ENST00000502274 2681 ntTSL 2 BASIC13.53□□□□□ -0.24
DEPDC4Q8N2C3 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
DEPDC4Q8N2C3 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
DEPDC4Q8N2C3 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
DEPDC4Q8N2C3 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC13.53□□□□□ -0.24
DEPDC4Q8N2C3 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
DEPDC4Q8N2C3 CASC10-201ENST00000377113 3801 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
DEPDC4Q8N2C3 AC010422.1-201ENST00000414548 543 ntTSL 2 BASIC13.53□□□□□ -0.24
DEPDC4Q8N2C3 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
DEPDC4Q8N2C3 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
DEPDC4Q8N2C3 AC098850.1-201ENST00000419919 790 ntBASIC13.53□□□□□ -0.24
DEPDC4Q8N2C3 NUS1P3-201ENST00000423502 862 ntBASIC13.53□□□□□ -0.24
DEPDC4Q8N2C3 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC13.53□□□□□ -0.24
DEPDC4Q8N2C3 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC13.53□□□□□ -0.24
DEPDC4Q8N2C3 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC13.53□□□□□ -0.24
DEPDC4Q8N2C3 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
DEPDC4Q8N2C3 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC13.53□□□□□ -0.24
DEPDC4Q8N2C3 AL049840.4-201ENST00000602422 811 ntBASIC13.53□□□□□ -0.24
DEPDC4Q8N2C3 AC017083.2-201ENST00000608069 979 ntBASIC13.53□□□□□ -0.24
DEPDC4Q8N2C3 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC13.53□□□□□ -0.24
DEPDC4Q8N2C3 AL162274.1-201ENST00000617191 1098 ntBASIC13.53□□□□□ -0.24
DEPDC4Q8N2C3 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
DEPDC4Q8N2C3 IGHV3-72-202ENST00000621503 303 ntBASIC13.53□□□□□ -0.24
DEPDC4Q8N2C3 OLFML2A-203ENST00000373580 6425 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
DEPDC4Q8N2C3 USP49-201ENST00000373006 3177 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
DEPDC4Q8N2C3 RHOH-224ENST00000622175 2254 ntAPPRIS P1 TSL 4 BASIC13.53□□□□□ -0.24
DEPDC4Q8N2C3 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
DEPDC4Q8N2C3 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC13.53□□□□□ -0.24
DEPDC4Q8N2C3 MLXIPL-204ENST00000414749 3224 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
DEPDC4Q8N2C3 RGS9-210ENST00000635833 2308 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
DEPDC4Q8N2C3 PVR-205ENST00000425690 3325 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
DEPDC4Q8N2C3 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
DEPDC4Q8N2C3 LINC01114-203ENST00000425879 2434 ntTSL 2 BASIC13.53□□□□□ -0.24
DEPDC4Q8N2C3 PASK-201ENST00000234040 4572 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
DEPDC4Q8N2C3 MYO16-203ENST00000357550 6779 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
DEPDC4Q8N2C3 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC13.53□□□□□ -0.24
DEPDC4Q8N2C3 FAM171B-201ENST00000304698 5826 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
DEPDC4Q8N2C3 LYN-204ENST00000520220 5808 ntAPPRIS ALT1 TSL 1 (best) BASIC13.53□□□□□ -0.24
DEPDC4Q8N2C3 CDK11A-201ENST00000356200 2653 ntTSL 5 BASIC13.53□□□□□ -0.24
DEPDC4Q8N2C3 COBL-205ENST00000441453 3785 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
DEPDC4Q8N2C3 CCDC117-205ENST00000448492 3937 ntTSL 2 BASIC13.53□□□□□ -0.24
DEPDC4Q8N2C3 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
DEPDC4Q8N2C3 PAF1-204ENST00000595564 1810 ntAPPRIS ALT2 TSL 2 BASIC13.53□□□□□ -0.24
DEPDC4Q8N2C3 MEX3B-202ENST00000558133 4333 ntBASIC13.53□□□□□ -0.24
DEPDC4Q8N2C3 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
DEPDC4Q8N2C3 MYO16-202ENST00000356711 6874 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
DEPDC4Q8N2C3 CHD5-201ENST00000262450 9646 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
DEPDC4Q8N2C3 HFE-202ENST00000317896 1922 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
DEPDC4Q8N2C3 GPC6-201ENST00000377047 6467 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
DEPDC4Q8N2C3 ARMC5-201ENST00000268314 3612 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.24
DEPDC4Q8N2C3 ZFP36L2-201ENST00000282388 3696 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
DEPDC4Q8N2C3 CELF1-214ENST00000531165 3650 ntTSL 2 BASIC13.52□□□□□ -0.24
DEPDC4Q8N2C3 C12orf43-202ENST00000445832 2397 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.24
DEPDC4Q8N2C3 SUCO-202ENST00000367723 5916 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
DEPDC4Q8N2C3 DNMT3B-202ENST00000328111 4336 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
DEPDC4Q8N2C3 CHRFAM7A-201ENST00000299847 6220 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
DEPDC4Q8N2C3 PRCP-201ENST00000313010 3090 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
DEPDC4Q8N2C3 SCNN1A-201ENST00000228916 3135 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.24
DEPDC4Q8N2C3 ZDHHC8-203ENST00000405930 3112 ntTSL 2 BASIC13.52□□□□□ -0.24
DEPDC4Q8N2C3 COL18A1-AS1-201ENST00000397787 3425 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
DEPDC4Q8N2C3 GRIN1-204ENST00000371553 3751 ntAPPRIS P4 TSL 1 (best) BASIC13.52□□□□□ -0.25
DEPDC4Q8N2C3 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.25
DEPDC4Q8N2C3 TLE1P1-201ENST00000422965 589 ntBASIC13.52□□□□□ -0.25
DEPDC4Q8N2C3 AL513323.1-201ENST00000431862 1063 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
DEPDC4Q8N2C3 AC234783.1-201ENST00000441761 496 ntBASIC13.52□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms