Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
PCDH1Q08174 NEDD4L-238ENST00000635997 4402 ntTSL 5 BASIC13.89□□□□□ -0.19
PCDH1Q08174 ARHGAP27-203ENST00000428638 4242 ntAPPRIS P2 TSL 5 BASIC13.89□□□□□ -0.19
PCDH1Q08174 SMARCA2-208ENST00000382194 5679 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
PCDH1Q08174 POLM-203ENST00000395831 2380 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
PCDH1Q08174 WNT7B-201ENST00000339464 3919 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
PCDH1Q08174 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC13.89□□□□□ -0.19
PCDH1Q08174 FCRL6-201ENST00000321935 1997 ntAPPRIS ALT2 TSL 2 BASIC13.89□□□□□ -0.19
PCDH1Q08174 TCHH-202ENST00000614923 6995 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
PCDH1Q08174 THSD4-201ENST00000261862 3133 ntTSL 5 BASIC13.89□□□□□ -0.19
PCDH1Q08174 ARHGAP45-201ENST00000313093 4273 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
PCDH1Q08174 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
PCDH1Q08174 RNF183-206ENST00000478815 2312 ntAPPRIS P1 BASIC13.89□□□□□ -0.19
PCDH1Q08174 CLEC18B-204ENST00000617101 2321 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
PCDH1Q08174 FAM90A7P-201ENST00000382628 1395 ntBASIC13.89□□□□□ -0.19
PCDH1Q08174 FAM90A23P-201ENST00000400136 1395 ntBASIC13.89□□□□□ -0.19
PCDH1Q08174 KRT8P29-201ENST00000420409 1371 ntBASIC13.89□□□□□ -0.19
PCDH1Q08174 RIMS1-214ENST00000518273 4116 ntTSL 5 BASIC13.89□□□□□ -0.19
PCDH1Q08174 AMMECR1-203ENST00000372059 3052 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
PCDH1Q08174 FRMD3-202ENST00000328788 964 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
PCDH1Q08174 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
PCDH1Q08174 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
PCDH1Q08174 SMS-201ENST00000379404 1174 ntTSL 3 BASIC13.89□□□□□ -0.19
PCDH1Q08174 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC13.89□□□□□ -0.19
PCDH1Q08174 MIR658-201ENST00000385210 100 ntBASIC13.89□□□□□ -0.19
PCDH1Q08174 AC103592.1-201ENST00000394513 664 ntBASIC13.89□□□□□ -0.19
PCDH1Q08174 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
PCDH1Q08174 FAM21FP-201ENST00000426241 1131 ntBASIC13.89□□□□□ -0.19
PCDH1Q08174 RLN3-201ENST00000431365 580 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
PCDH1Q08174 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC13.89□□□□□ -0.19
PCDH1Q08174 HLA-J-204ENST00000495278 958 ntBASIC13.89□□□□□ -0.19
PCDH1Q08174 AC005962.1-201ENST00000584100 773 ntBASIC13.89□□□□□ -0.19
PCDH1Q08174 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC13.89□□□□□ -0.19
PCDH1Q08174 DHPS-207ENST00000594424 1172 ntTSL 3 BASIC13.89□□□□□ -0.19
PCDH1Q08174 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC13.89□□□□□ -0.19
PCDH1Q08174 AC022748.3-201ENST00000621828 275 ntBASIC13.89□□□□□ -0.19
PCDH1Q08174 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC13.89□□□□□ -0.19
PCDH1Q08174 OR2A25-202ENST00000641441 1733 ntAPPRIS P1 BASIC13.89□□□□□ -0.19
PCDH1Q08174 CMTR2-201ENST00000338099 4869 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
PCDH1Q08174 CDK20-202ENST00000336654 2176 ntTSL 2 BASIC13.89□□□□□ -0.19
PCDH1Q08174 ZSCAN5A-206ENST00000587492 1542 ntTSL 2 BASIC13.89□□□□□ -0.19
PCDH1Q08174 ARID3B-201ENST00000346246 4271 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
PCDH1Q08174 SH3GLB2-205ENST00000416629 1415 ntTSL 5 BASIC13.89□□□□□ -0.19
PCDH1Q08174 PLSCR1-214ENST00000487389 1443 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
PCDH1Q08174 PATL2-201ENST00000434130 1950 ntAPPRIS P3 TSL 5 BASIC13.89□□□□□ -0.19
PCDH1Q08174 KIAA0895L-202ENST00000561621 3500 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
PCDH1Q08174 PAX5-214ENST00000523241 1342 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
PCDH1Q08174 PAPPA-201ENST00000328252 10959 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
PCDH1Q08174 SERPING1-204ENST00000378324 1751 ntAPPRIS ALT2 TSL 2 BASIC13.88□□□□□ -0.19
PCDH1Q08174 TTC39A-216ENST00000530004 1780 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
PCDH1Q08174 PSMD9-207ENST00000541212 2784 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
PCDH1Q08174 CCNDBP1-201ENST00000300213 3660 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
PCDH1Q08174 CCT8L1P-201ENST00000465400 1674 ntBASIC13.88□□□□□ -0.19
PCDH1Q08174 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
PCDH1Q08174 TMEM87A-201ENST00000307216 1598 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
PCDH1Q08174 SGK2-201ENST00000341458 2498 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
PCDH1Q08174 SLC38A9-202ENST00000396865 2927 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
PCDH1Q08174 ITGB2-208ENST00000397857 2813 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
PCDH1Q08174 MCRS1-201ENST00000343810 1928 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
PCDH1Q08174 AC082651.3-201ENST00000474667 1947 ntTSL 2 BASIC13.88□□□□□ -0.19
PCDH1Q08174 KLHDC8A-202ENST00000367156 3177 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
PCDH1Q08174 PID1-202ENST00000392054 2745 ntTSL 2 BASIC13.88□□□□□ -0.19
PCDH1Q08174 KCNN2-206ENST00000512097 3076 ntAPPRIS P2 TSL 5 BASIC13.88□□□□□ -0.19
PCDH1Q08174 NOL9-201ENST00000377705 6649 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
PCDH1Q08174 NRXN1-222ENST00000625672 8113 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
PCDH1Q08174 ZNF674-AS1-201ENST00000421685 2078 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
PCDH1Q08174 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
PCDH1Q08174 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
PCDH1Q08174 C19orf18-201ENST00000314391 915 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
PCDH1Q08174 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC13.88□□□□□ -0.19
PCDH1Q08174 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC13.88□□□□□ -0.19
PCDH1Q08174 Z93015.1-201ENST00000451718 390 ntBASIC13.88□□□□□ -0.19
PCDH1Q08174 HOXB-AS3-206ENST00000474040 741 ntTSL 3 BASIC13.88□□□□□ -0.19
PCDH1Q08174 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
PCDH1Q08174 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
PCDH1Q08174 FADS2-212ENST00000522639 360 ntTSL 5 BASIC13.88□□□□□ -0.19
PCDH1Q08174 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
PCDH1Q08174 AC140658.4-201ENST00000561990 352 ntBASIC13.88□□□□□ -0.19
PCDH1Q08174 FADS2-215ENST00000574708 385 ntTSL 3 BASIC13.88□□□□□ -0.19
PCDH1Q08174 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC13.88□□□□□ -0.19
PCDH1Q08174 AC008537.4-201ENST00000595728 1103 ntTSL 5 BASIC13.88□□□□□ -0.19
PCDH1Q08174 ALKBH7-202ENST00000596657 603 ntTSL 2 BASIC13.88□□□□□ -0.19
PCDH1Q08174 ZNF586-206ENST00000599802 581 ntTSL 3 BASIC13.88□□□□□ -0.19
PCDH1Q08174 BNIP3P13-201ENST00000599968 566 ntBASIC13.88□□□□□ -0.19
PCDH1Q08174 LINC01726-201ENST00000624692 1253 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
PCDH1Q08174 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC13.88□□□□□ -0.19
PCDH1Q08174 PCBP2-215ENST00000549863 1619 ntTSL 5 BASIC13.88□□□□□ -0.19
PCDH1Q08174 COL8A2-201ENST00000303143 4447 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
PCDH1Q08174 KCNH6-202ENST00000456941 2928 ntTSL 5 BASIC13.88□□□□□ -0.19
PCDH1Q08174 EXO5-201ENST00000296380 2217 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
PCDH1Q08174 PRDM10-204ENST00000423662 5998 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
PCDH1Q08174 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
PCDH1Q08174 ALG3-205ENST00000445626 1533 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
PCDH1Q08174 PSEN2-201ENST00000366782 2465 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
PCDH1Q08174 G3BP2-202ENST00000359707 4883 ntAPPRIS P4 TSL 1 (best) BASIC13.88□□□□□ -0.19
PCDH1Q08174 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
PCDH1Q08174 ZNF460-202ENST00000537645 2037 ntTSL 2 BASIC13.88□□□□□ -0.19
PCDH1Q08174 CDK17-201ENST00000261211 4157 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
PCDH1Q08174 AL157996.1-201ENST00000624684 2299 ntBASIC13.88□□□□□ -0.19
PCDH1Q08174 TFR2-201ENST00000223051 2888 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms